RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 GABARAPL2P60520 117 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 ISL1P61371 349 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 SNRPGP62308 76 aaKnown RBP4.56□□□□□ -1.68
LDLR-209ENST00000558528 HOXC5Q00444 222 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 CDK5Q00535 292 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 ZNF117Q03924 483 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 LGALS3BPQ08380 585 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 MZT1Q08AG7 82 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 SELENBP1Q13228 472 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 ITGADQ13349 1161 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 MFAP5Q13361 173 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 GINS1Q14691 196 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 HSPB2Q16082 182 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 MLANAQ16655 118 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 PNLIPRP3Q17RR3 467 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 VWC2Q2TAL6 325 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 HFEQ30201 348 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 KLHL22Q53GT1 634 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 SLX4IPQ5VYV7 408 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 TIGD3Q6B0B8 471 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 SLC25A25Q6KCM7 469 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 C3orf33Q6P1S2 294 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 TMEM65Q6PI78 240 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 CBLN3Q6UW01 205 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 UGT2A3Q6UWM9 527 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 APOOLQ6UXV4 268 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 DPY19L2P2Q6ZN68 376 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 Q6ZRM9 215 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 HDDC2Q7Z4H3 204 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 HMGN2P46Q86SG4 172 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 MARCH9Q86YJ5 346 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 ZDHHC23Q8IYP9 409 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 KDM8Q8N371 416 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 ZNF786Q8N393 782 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 FADS6Q8N9I5 356 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 GATSQ8NAP1 163 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 CPEB3Q8NE35 698 aaKnown RBP4.56□□□□□ -1.68
LDLR-209ENST00000558528 GJC3Q8NFK1 279 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 OR10G3Q8NGC4 313 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 MFSD8Q8NHS3 518 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 RHOXF1Q8NHV9 184 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 TMEM255BQ8WV15 326 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 SNAPC3Q92966 411 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 SNRNP40Q96DI7 357 aaKnown RBP4.56□□□□□ -1.68
LDLR-209ENST00000558528 ZHX1-C8orf76Q96EF9 292 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 MRPL48Q96GC5 212 aaKnown RBP4.56□□□□□ -1.68
LDLR-209ENST00000558528 C5orf30Q96GV9 206 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 SH3YL1Q96HL8 342 aaPredicted RBP4.56□□□□□ -1.68
LDLR-209ENST00000558528 ZNF570Q96NI8 536 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 MBOAT4Q96T53 435 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 TXN2Q99757 166 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 FAM173AQ9BQD7 235 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 WFDC6Q9BQY6 131 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 TSSK6Q9BXA6 273 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 POLDIP3Q9BY77 421 aaKnown RBP4.56□□□□□ -1.68
LDLR-209ENST00000558528 MRPS26Q9BYN8 205 aaKnown RBP4.56□□□□□ -1.68
LDLR-209ENST00000558528 ADNPQ9H2P0 1102 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 DSN1Q9H410 356 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 SH2D2AQ9NP31 389 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 ZFP64Q9NPA5 681 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 TIGARQ9NQ88 270 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 CTPS2Q9NRF8 586 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 PLCXD1Q9NUJ7 323 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 PAQR5Q9NXK6 330 aaPredicted RBP4.56□□□□□ -1.68
LDLR-209ENST00000558528 FLRT3Q9NZU0 649 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 CHRNA9Q9UGM1 479 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 KLHL21Q9UJP4 597 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 DKKL1Q9UK85 242 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP4.56□□□□□ -1.68
LDLR-209ENST00000558528 TRAPPC4Q9Y296 219 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 TMED7Q9Y3B3 224 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 HDGFL3Q9Y3E1 203 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 PCDHGB1Q9Y5G3 927 aa4.56□□□□□ -1.68
LDLR-209ENST00000558528 CHCHD2Q9Y6H1 151 aaPredicted RBP4.56□□□□□ -1.68
LDLR-209ENST00000558528 TDRD6O60522 2096 aaKnown RBP4.55□□□□□ -1.68
LDLR-209ENST00000558528 HEATR5BQ9P2D3 2071 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 KRTAP23-1A1A580 65 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 OR5H15A6NDH6 313 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 RIIAD1A6NNX1 92 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 E9PQ18 207 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 ARPC3O15145 178 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 EIF1BO60739 113 aaKnown RBP4.55□□□□□ -1.68
LDLR-209ENST00000558528 SMPD2O60906 423 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 VAMP5O95183 116 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 LYPD3O95274 346 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 CLPTM1O96005 669 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 SP1P08047 785 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 NR2C1P13056 603 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 ZNF3P17036 446 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 SRD5A1P18405 259 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 BMP5P22003 454 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 DPP4P27487 766 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 IDUAP35475 653 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 RPL4P36578 427 aaKnown RBP4.55□□□□□ -1.68
LDLR-209ENST00000558528 PTGDSP41222 190 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 RPL5P46777 297 aaKnown RBP4.55□□□□□ -1.68
LDLR-209ENST00000558528 PCYT1AP49585 367 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 BLVRAP53004 296 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 SLURP1P55000 103 aa4.55□□□□□ -1.68
LDLR-209ENST00000558528 CSNK2A1P68400 391 aaPredicted RBP4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms