RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 ADGRL4Q9HBW9 690 aa11.14□□□□□ -0.63
SHMT2-227ENST00000557269 AMBNQ9NP70 447 aa11.14□□□□□ -0.63
SHMT2-227ENST00000557269 GDF2Q9UK05 429 aaPredicted RBP11.14□□□□□ -0.63
SHMT2-227ENST00000557269 POLR1DQ9Y2S0 133 aa11.14□□□□□ -0.63
SHMT2-227ENST00000557269 PCDHGB5Q9Y5G0 923 aa11.14□□□□□ -0.63
SHMT2-227ENST00000557269 TIMM10BQ9Y5J6 103 aa11.14□□□□□ -0.63
SHMT2-227ENST00000557269 SLC22A31A6NKX4 558 aa11.13□□□□□ -0.63
SHMT2-227ENST00000557269 CASKO14936 926 aa11.13□□□□□ -0.63
SHMT2-227ENST00000557269 MPZL2O60487 215 aa11.13□□□□□ -0.63
SHMT2-227ENST00000557269 RAB36O95755 333 aa11.13□□□□□ -0.63
SHMT2-227ENST00000557269 SERPINA5P05154 406 aa11.13□□□□□ -0.63
SHMT2-227ENST00000557269 CCL2P13500 99 aa11.13□□□□□ -0.63
SHMT2-227ENST00000557269 CD40P25942 277 aa11.13□□□□□ -0.63
SHMT2-227ENST00000557269 PCBD1P61457 104 aa11.13□□□□□ -0.63
SHMT2-227ENST00000557269 BSPH1Q075Z2 132 aa11.13□□□□□ -0.63
SHMT2-227ENST00000557269 CDK5R2Q13319 367 aa11.13□□□□□ -0.63
SHMT2-227ENST00000557269 DAZAP2Q15038 168 aaPredicted RBP11.13□□□□□ -0.63
SHMT2-227ENST00000557269 TEX30Q5JUR7 227 aa11.13□□□□□ -0.63
SHMT2-227ENST00000557269 NCMAPQ5T1S8 102 aa11.13□□□□□ -0.63
SHMT2-227ENST00000557269 MEDAGQ5VYS4 303 aa11.13□□□□□ -0.63
SHMT2-227ENST00000557269 TMEM53Q6P2H8 277 aa11.13□□□□□ -0.63
SHMT2-227ENST00000557269 TMEM154Q6P9G4 183 aa11.13□□□□□ -0.63
SHMT2-227ENST00000557269 VASH1Q7L8A9 365 aaPredicted RBP11.13□□□□□ -0.63
SHMT2-227ENST00000557269 DPY19L4Q7Z388 723 aa11.13□□□□□ -0.63
SHMT2-227ENST00000557269 DCXRQ7Z4W1 244 aa11.13□□□□□ -0.63
SHMT2-227ENST00000557269 DPPA2Q7Z7J5 298 aa11.13□□□□□ -0.63
SHMT2-227ENST00000557269 SYT9Q86SS6 491 aa11.13□□□□□ -0.63
SHMT2-227ENST00000557269 C8orf59Q8N0T1 100 aaPredicted RBP11.13□□□□□ -0.63
SHMT2-227ENST00000557269 PAQR4Q8N4S7 273 aaPredicted RBP11.13□□□□□ -0.63
SHMT2-227ENST00000557269 RFLNBQ8N5W9 214 aa11.13□□□□□ -0.63
SHMT2-227ENST00000557269 CDADC1Q9BWV3 514 aa11.13□□□□□ -0.63
SHMT2-227ENST00000557269 PNRC2Q9NPJ4 139 aaKnown RBP11.13□□□□□ -0.63
SHMT2-227ENST00000557269 CLN6Q9NWW5 311 aa11.13□□□□□ -0.63
SHMT2-227ENST00000557269 HAO2Q9NYQ3 351 aa11.13□□□□□ -0.63
SHMT2-227ENST00000557269 KCNN3Q9UGI6 736 aa11.13□□□□□ -0.63
SHMT2-227ENST00000557269 WARS2Q9UGM6 360 aaKnown RBP11.13□□□□□ -0.63
SHMT2-227ENST00000557269 KCNG2Q9UJ96 466 aa11.13□□□□□ -0.63
SHMT2-227ENST00000557269 COPS3Q9UNS2 423 aa11.13□□□□□ -0.63
SHMT2-227ENST00000557269 SPTAN1Q13813 2472 aaKnown RBP11.12□□□□□ -0.63
SHMT2-227ENST00000557269 LOC100509620A0A075B734 347 aa11.12□□□□□ -0.63
SHMT2-227ENST00000557269 A0A1W2PPR1 153 aa11.12□□□□□ -0.63
SHMT2-227ENST00000557269 PRR32B1ATL7 298 aa11.12□□□□□ -0.63
SHMT2-227ENST00000557269 SYNGR3O43761 229 aa11.12□□□□□ -0.63
SHMT2-227ENST00000557269 PLAUP00749 431 aa11.12□□□□□ -0.63
SHMT2-227ENST00000557269 MYF6P23409 242 aa11.12□□□□□ -0.63
SHMT2-227ENST00000557269 APEX1P27695 318 aaKnown RBP11.12□□□□□ -0.63
SHMT2-227ENST00000557269 CALCRP30988 508 aa11.12□□□□□ -0.63
SHMT2-227ENST00000557269 ZNF91Q05481 1191 aa11.12□□□□□ -0.63
SHMT2-227ENST00000557269 SCRN3Q0VDG4 424 aa11.12□□□□□ -0.63
SHMT2-227ENST00000557269 RSPO1Q2MKA7 263 aaPredicted RBP11.12□□□□□ -0.63
SHMT2-227ENST00000557269 C1QTNF12Q5T7M4 302 aa11.12□□□□□ -0.63
SHMT2-227ENST00000557269 LCN1P1Q5VSP4 162 aa11.12□□□□□ -0.63
SHMT2-227ENST00000557269 ZNF787Q6DD87 383 aa11.12□□□□□ -0.63
SHMT2-227ENST00000557269 SPATC1Q76KD6 591 aa11.12□□□□□ -0.63
SHMT2-227ENST00000557269 SLC16A9Q7RTY1 509 aa11.12□□□□□ -0.63
SHMT2-227ENST00000557269 THAP5Q7Z6K1 395 aa11.12□□□□□ -0.63
SHMT2-227ENST00000557269 CDC20BQ86Y33 519 aa11.12□□□□□ -0.63
SHMT2-227ENST00000557269 SETD9Q8NE22 299 aa11.12□□□□□ -0.63
SHMT2-227ENST00000557269 OR4F15Q8NGB8 312 aa11.12□□□□□ -0.63
SHMT2-227ENST00000557269 OR51G2Q8NGK0 314 aa11.12□□□□□ -0.63
SHMT2-227ENST00000557269 OR2AJ1Q8NGZ0 328 aa11.12□□□□□ -0.63
SHMT2-227ENST00000557269 ST7LQ8TDW4 575 aa11.12□□□□□ -0.63
SHMT2-227ENST00000557269 SLC7A6Q92536 515 aa11.12□□□□□ -0.63
SHMT2-227ENST00000557269 RNFT2Q96EX2 444 aa11.12□□□□□ -0.63
SHMT2-227ENST00000557269 PIK3IP1Q96FE7 263 aa11.12□□□□□ -0.63
SHMT2-227ENST00000557269 CNN2Q99439 309 aaKnown RBP11.12□□□□□ -0.63
SHMT2-227ENST00000557269 ZNF184Q99676 751 aaPredicted RBP11.12□□□□□ -0.63
SHMT2-227ENST00000557269 RHNO1Q9BSD3 238 aa11.12□□□□□ -0.63
SHMT2-227ENST00000557269 ANKRD60Q9BZ19 345 aa11.12□□□□□ -0.63
SHMT2-227ENST00000557269 RASSF4Q9H2L5 321 aa11.12□□□□□ -0.63
SHMT2-227ENST00000557269 HSPE1-MOB4S4R3N1 261 aa11.12□□□□□ -0.63
SHMT2-227ENST00000557269 FAM221AA4D161 298 aa11.11□□□□□ -0.63
SHMT2-227ENST00000557269 OR6C6A6NF89 314 aa11.11□□□□□ -0.63
SHMT2-227ENST00000557269 A6NNC1 897 aa11.11□□□□□ -0.63
SHMT2-227ENST00000557269 SGCEO43556 437 aa11.11□□□□□ -0.63
SHMT2-227ENST00000557269 DOK2O60496 412 aa11.11□□□□□ -0.63
SHMT2-227ENST00000557269 ADRA2AP08913 450 aa11.11□□□□□ -0.63
SHMT2-227ENST00000557269 DBHP09172 617 aa11.11□□□□□ -0.63
SHMT2-227ENST00000557269 SBK2P0C263 348 aa11.11□□□□□ -0.63
SHMT2-227ENST00000557269 DBTP11182 482 aaKnown RBP11.11□□□□□ -0.63
SHMT2-227ENST00000557269 ALOX5APP20292 161 aa11.11□□□□□ -0.63
SHMT2-227ENST00000557269 STOMP27105 288 aa11.11□□□□□ -0.63
SHMT2-227ENST00000557269 MTNR1AP48039 350 aa11.11□□□□□ -0.63
SHMT2-227ENST00000557269 HSPA13P48723 471 aa11.11□□□□□ -0.63
SHMT2-227ENST00000557269 NAAAQ02083 359 aa11.11□□□□□ -0.63
SHMT2-227ENST00000557269 EIF2B1Q14232 305 aaKnown RBP11.11□□□□□ -0.63
SHMT2-227ENST00000557269 C3orf36Q3SXR2 165 aa11.11□□□□□ -0.63
SHMT2-227ENST00000557269 BEX5Q5H9J7 111 aa11.11□□□□□ -0.63
SHMT2-227ENST00000557269 ELFN2Q5R3F8 820 aa11.11□□□□□ -0.63
SHMT2-227ENST00000557269 SSX8Q7RTT4 187 aa11.11□□□□□ -0.63
SHMT2-227ENST00000557269 SLC35F2Q8IXU6 374 aa11.11□□□□□ -0.63
SHMT2-227ENST00000557269 SLC30A7Q8NEW0 376 aa11.11□□□□□ -0.63
SHMT2-227ENST00000557269 GJC3Q8NFK1 279 aa11.11□□□□□ -0.63
SHMT2-227ENST00000557269 OR1F12Q8NHA8 337 aa11.11□□□□□ -0.63
SHMT2-227ENST00000557269 OTOSQ8NHW6 89 aa11.11□□□□□ -0.63
SHMT2-227ENST00000557269 NEUROG1Q92886 237 aa11.11□□□□□ -0.63
SHMT2-227ENST00000557269 RFKQ969G6 155 aa11.11□□□□□ -0.63
SHMT2-227ENST00000557269 LGALS12Q96DT0 336 aa11.11□□□□□ -0.63
SHMT2-227ENST00000557269 POM121L2Q96KW2 1035 aa11.11□□□□□ -0.63
SHMT2-227ENST00000557269 Q96MT0 163 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms