RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 FGF11Q92914 225 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 ZNF317Q96PQ6 595 aaPredicted RBP3.41□□□□□ -1.86
PRPF39-209ENST00000556353 SMIM14Q96QK8 99 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 WRAP53Q9BUR4 548 aaKnown RBP3.41□□□□□ -1.86
PRPF39-209ENST00000556353 CHID1Q9BWS9 393 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 CACNG6Q9BXT2 260 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 ZYG11BQ9C0D3 744 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 VCX2Q9H322 139 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 METTL7AQ9H8H3 244 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 ELL3Q9HB65 397 aaPredicted RBP3.41□□□□□ -1.86
PRPF39-209ENST00000556353 PALMDQ9NP74 551 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 INIPQ9NRY2 104 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 FAM212BQ9NTI7 297 aaPredicted RBP3.41□□□□□ -1.86
PRPF39-209ENST00000556353 ETNK2Q9NVF9 386 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 GPATCH2LQ9NWQ4 482 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 ERVK-18Q9QC07 812 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 OR12D3Q9UGF7 316 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 STRAPQ9Y3F4 350 aaKnown RBP3.41□□□□□ -1.86
PRPF39-209ENST00000556353 LRRC42Q9Y546 428 aa3.41□□□□□ -1.86
PRPF39-209ENST00000556353 PCYT1BQ9Y5K3 369 aaPredicted RBP3.41□□□□□ -1.86
PRPF39-209ENST00000556353 DNHD1Q96M86 4753 aa3.4□□□□□ -1.86
PRPF39-209ENST00000556353 WI2-2373I1.2A0A1W2PRP0 233 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 D6RAR5 112 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 AQP9O43315 295 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 KDELR3O43731 214 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 SELENOFO60613 162 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 DNAJB6O75190 326 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 SOD1P00441 154 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 SERPINA6P08185 405 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 PLEKP08567 350 aaPredicted RBP3.4□□□□□ -1.87
PRPF39-209ENST00000556353 ABHD2P08910 425 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 OR4E1P0C645 316 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 PGAM2P15259 253 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 CBR1P16152 277 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 PTNP21246 168 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 CCNOP22674 350 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 AKT2P31751 481 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 SOAT1P35610 550 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 SLC1A1P43005 524 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 CEBPGP53567 150 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 PSMD4P55036 377 aaKnown RBP3.4□□□□□ -1.87
PRPF39-209ENST00000556353 SPCS3P61009 180 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 SKP1P63208 163 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 CSNK1G2P78368 415 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 XIAPP98170 497 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 STX5Q13190 355 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 SNTB2Q13425 540 aaKnown RBP3.4□□□□□ -1.87
PRPF39-209ENST00000556353 SLC17A1Q14916 467 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 KIAA0040Q15053 153 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 CYTH1Q15438 398 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 TGIF1Q15583 401 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 HKDC1Q2TB90 917 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 LINC00303Q3SY05 128 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 SPANXN2Q5MJ10 180 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 AGAP6Q5VW22 663 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 NKAIN2Q5VXU1 208 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 CARD17Q5XLA6 110 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 DUPD1Q68J44 220 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 RWDD4Q6NW29 188 aaKnown RBP3.4□□□□□ -1.87
PRPF39-209ENST00000556353 WDR59Q6PJI9 974 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 ARSKQ6UWY0 536 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 KCTD9Q7L273 389 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 VTCN1Q7Z7D3 282 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 PHF13Q86YI8 300 aaPredicted RBP3.4□□□□□ -1.87
PRPF39-209ENST00000556353 GPR137CQ8N3F9 429 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 CEP112Q8N8E3 955 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 ASCC1Q8N9N2 400 aaKnown RBP3.4□□□□□ -1.87
PRPF39-209ENST00000556353 MLKLQ8NB16 471 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 OR2AP1Q8NGE2 309 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 OR6Q1Q8NGQ2 317 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 CCL4L1Q8NHW4 92 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 NDNFQ8TB73 568 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 LMX1AQ8TE12 382 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 PATE1Q8WXA2 126 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 NTAN1Q96AB6 310 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 ECHDC3Q96DC8 303 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 CELF6Q96J87 481 aaKnown RBP3.4□□□□□ -1.87
PRPF39-209ENST00000556353 ZNF578Q96N58 590 aaPredicted RBP3.4□□□□□ -1.87
PRPF39-209ENST00000556353 MCEEQ96PE7 176 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 SCN2AQ99250 2005 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 GPA33Q99795 319 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 ATG101Q9BSB4 218 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 ANGPTL4Q9BY76 406 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 POTEKPQ9BYX7 375 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 SLC22A4Q9H015 551 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 DNTTIP1Q9H147 329 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 RGCCQ9H4X1 137 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 AUNIPQ9H7T9 357 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 VCX3AQ9NNX9 186 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 GPR173Q9NS66 373 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 C20orf96Q9NUD7 363 aaPredicted RBP3.4□□□□□ -1.87
PRPF39-209ENST00000556353 TRMT6Q9UJA5 497 aaKnown RBP3.4□□□□□ -1.87
PRPF39-209ENST00000556353 EIF3LQ9Y262 564 aaKnown RBP3.4□□□□□ -1.87
PRPF39-209ENST00000556353 ZNF175Q9Y473 711 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 OR1A2Q9Y585 309 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 MYO7BQ6PIF6 2116 aa3.4□□□□□ -1.87
PRPF39-209ENST00000556353 FLNAP21333 2647 aaKnown RBP3.4□□□□□ -1.87
PRPF39-209ENST00000556353 DNAJC13O75165 2243 aa3.39□□□□□ -1.87
PRPF39-209ENST00000556353 ACANP16112 2415 aa3.39□□□□□ -1.87
PRPF39-209ENST00000556353 CXorf51AA0A1B0GTR3 108 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms