RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 HIST2H3AQ71DI3 136 aa10.65□□□□□ -0.7
SHMT2-209ENST00000553949 SLC16A9Q7RTY1 509 aa10.65□□□□□ -0.7
SHMT2-209ENST00000553949 DPY19L4Q7Z388 723 aa10.65□□□□□ -0.7
SHMT2-209ENST00000553949 ZNF584Q8IVC4 421 aa10.65□□□□□ -0.7
SHMT2-209ENST00000553949 CPEB3Q8NE35 698 aaKnown RBP10.65□□□□□ -0.7
SHMT2-209ENST00000553949 GJC3Q8NFK1 279 aa10.65□□□□□ -0.7
SHMT2-209ENST00000553949 OR6N2Q8NGY6 317 aa10.65□□□□□ -0.7
SHMT2-209ENST00000553949 OR2AJ1Q8NGZ0 328 aa10.65□□□□□ -0.7
SHMT2-209ENST00000553949 AKR7LQ8NHP1 331 aa10.65□□□□□ -0.7
SHMT2-209ENST00000553949 FBLIM1Q8WUP2 373 aa10.65□□□□□ -0.7
SHMT2-209ENST00000553949 RNFT2Q96EX2 444 aa10.65□□□□□ -0.7
SHMT2-209ENST00000553949 ZNF75AQ96N20 296 aa10.65□□□□□ -0.7
SHMT2-209ENST00000553949 CNN2Q99439 309 aaKnown RBP10.65□□□□□ -0.7
SHMT2-209ENST00000553949 ANKRD60Q9BZ19 345 aa10.65□□□□□ -0.7
SHMT2-209ENST00000553949 ADGRL4Q9HBW9 690 aa10.65□□□□□ -0.7
SHMT2-209ENST00000553949 GDF2Q9UK05 429 aaPredicted RBP10.65□□□□□ -0.7
SHMT2-209ENST00000553949 FBXL3Q9UKT7 428 aa10.65□□□□□ -0.7
SHMT2-209ENST00000553949 IGHV1-18A0A0C4DH31 117 aa10.64□□□□□ -0.71
SHMT2-209ENST00000553949 DEFB108AA8MXU0 73 aa10.64□□□□□ -0.71
SHMT2-209ENST00000553949 SIAH2O43255 324 aa10.64□□□□□ -0.71
SHMT2-209ENST00000553949 SGCEO43556 437 aa10.64□□□□□ -0.71
SHMT2-209ENST00000553949 SERPINA5P05154 406 aa10.64□□□□□ -0.71
SHMT2-209ENST00000553949 SBK2P0C263 348 aa10.64□□□□□ -0.71
SHMT2-209ENST00000553949 CECR9P0C854 216 aa10.64□□□□□ -0.71
SHMT2-209ENST00000553949 DBTP11182 482 aaKnown RBP10.64□□□□□ -0.71
SHMT2-209ENST00000553949 ZNF14P17017 642 aaPredicted RBP10.64□□□□□ -0.71
SHMT2-209ENST00000553949 MYF6P23409 242 aa10.64□□□□□ -0.71
SHMT2-209ENST00000553949 CD40P25942 277 aa10.64□□□□□ -0.71
SHMT2-209ENST00000553949 MTNR1AP48039 350 aa10.64□□□□□ -0.71
SHMT2-209ENST00000553949 NUDT6P53370 316 aa10.64□□□□□ -0.71
SHMT2-209ENST00000553949 PLP2Q04941 152 aa10.64□□□□□ -0.71
SHMT2-209ENST00000553949 POU4F2Q12837 409 aa10.64□□□□□ -0.71
SHMT2-209ENST00000553949 CDK5R2Q13319 367 aa10.64□□□□□ -0.71
SHMT2-209ENST00000553949 DAZAP2Q15038 168 aaPredicted RBP10.64□□□□□ -0.71
SHMT2-209ENST00000553949 SMN1Q16637 294 aaKnown RBP10.64□□□□□ -0.71
SHMT2-209ENST00000553949 CCDC92Q53HC0 331 aaPredicted RBP10.64□□□□□ -0.71
SHMT2-209ENST00000553949 BEX5Q5H9J7 111 aa10.64□□□□□ -0.71
SHMT2-209ENST00000553949 ZNF774Q6NX45 483 aa10.64□□□□□ -0.71
SHMT2-209ENST00000553949 TMEM108Q6UXF1 575 aa10.64□□□□□ -0.71
SHMT2-209ENST00000553949 CFAP77Q6ZQR2 320 aa10.64□□□□□ -0.71
SHMT2-209ENST00000553949 VASH1Q7L8A9 365 aaPredicted RBP10.64□□□□□ -0.71
SHMT2-209ENST00000553949 SHFQ7M4L6 423 aa10.64□□□□□ -0.71
SHMT2-209ENST00000553949 MYPOPQ86VE0 399 aaPredicted RBP10.64□□□□□ -0.71
SHMT2-209ENST00000553949 ZNF454Q8N9F8 522 aa10.64□□□□□ -0.71
SHMT2-209ENST00000553949 OR51G2Q8NGK0 314 aa10.64□□□□□ -0.71
SHMT2-209ENST00000553949 SMAP2Q8WU79 429 aaPredicted RBP10.64□□□□□ -0.71
SHMT2-209ENST00000553949 MS4A3Q96HJ5 214 aa10.64□□□□□ -0.71
SHMT2-209ENST00000553949 MAP6Q96JE9 813 aa10.64□□□□□ -0.71
SHMT2-209ENST00000553949 WNT5BQ9H1J7 359 aa10.64□□□□□ -0.71
SHMT2-209ENST00000553949 ESRP2Q9H6T0 727 aaKnown RBP10.64□□□□□ -0.71
SHMT2-209ENST00000553949 AMBNQ9NP70 447 aa10.64□□□□□ -0.71
SHMT2-209ENST00000553949 PLEK2Q9NYT0 353 aa10.64□□□□□ -0.71
SHMT2-209ENST00000553949 USP9YO00507 2555 aaPredicted RBP10.63□□□□□ -0.71
SHMT2-209ENST00000553949 IQCMA0A1B0GVH7 501 aa10.63□□□□□ -0.71
SHMT2-209ENST00000553949 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.63□□□□□ -0.71
SHMT2-209ENST00000553949 DPRXA6NFQ7 191 aa10.63□□□□□ -0.71
SHMT2-209ENST00000553949 SYNGR3O43761 229 aa10.63□□□□□ -0.71
SHMT2-209ENST00000553949 DOK2O60496 412 aa10.63□□□□□ -0.71
SHMT2-209ENST00000553949 APOL3O95236 402 aa10.63□□□□□ -0.71
SHMT2-209ENST00000553949 PTHP01270 115 aa10.63□□□□□ -0.71
SHMT2-209ENST00000553949 PTAFRP25105 342 aa10.63□□□□□ -0.71
SHMT2-209ENST00000553949 ATP6V1E1P36543 226 aa10.63□□□□□ -0.71
SHMT2-209ENST00000553949 HCCSP53701 268 aa10.63□□□□□ -0.71
SHMT2-209ENST00000553949 ZNF91Q05481 1191 aa10.63□□□□□ -0.71
SHMT2-209ENST00000553949 BSPH1Q075Z2 132 aa10.63□□□□□ -0.71
SHMT2-209ENST00000553949 EIF2B1Q14232 305 aaKnown RBP10.63□□□□□ -0.71
SHMT2-209ENST00000553949 RAB35Q15286 201 aa10.63□□□□□ -0.71
SHMT2-209ENST00000553949 ELFN2Q5R3F8 820 aa10.63□□□□□ -0.71
SHMT2-209ENST00000553949 LAIR2Q6ISS4 152 aa10.63□□□□□ -0.71
SHMT2-209ENST00000553949 TMEM154Q6P9G4 183 aa10.63□□□□□ -0.71
SHMT2-209ENST00000553949 DCXRQ7Z4W1 244 aa10.63□□□□□ -0.71
SHMT2-209ENST00000553949 CDC20BQ86Y33 519 aa10.63□□□□□ -0.71
SHMT2-209ENST00000553949 ALDH16A1Q8IZ83 802 aa10.63□□□□□ -0.71
SHMT2-209ENST00000553949 SLC30A7Q8NEW0 376 aa10.63□□□□□ -0.71
SHMT2-209ENST00000553949 OR4F15Q8NGB8 312 aa10.63□□□□□ -0.71
SHMT2-209ENST00000553949 OTOSQ8NHW6 89 aa10.63□□□□□ -0.71
SHMT2-209ENST00000553949 ST7LQ8TDW4 575 aa10.63□□□□□ -0.71
SHMT2-209ENST00000553949 PLPPR2Q96GM1 343 aa10.63□□□□□ -0.71
SHMT2-209ENST00000553949 CNBD2Q96M20 576 aa10.63□□□□□ -0.71
SHMT2-209ENST00000553949 YIPF3Q9GZM5 350 aa10.63□□□□□ -0.71
SHMT2-209ENST00000553949 C1orf198Q9H425 327 aa10.63□□□□□ -0.71
SHMT2-209ENST00000553949 Q9H521 79 aa10.63□□□□□ -0.71
SHMT2-209ENST00000553949 PNRC2Q9NPJ4 139 aaKnown RBP10.63□□□□□ -0.71
SHMT2-209ENST00000553949 KLHDC2Q9Y2U9 406 aa10.63□□□□□ -0.71
SHMT2-209ENST00000553949 RPL36Q9Y3U8 105 aaKnown RBP10.63□□□□□ -0.71
SHMT2-209ENST00000553949 ANKHD1Q8IWZ3 2542 aaKnown RBP10.62□□□□□ -0.71
SHMT2-209ENST00000553949 SPTAN1Q13813 2472 aaKnown RBP10.62□□□□□ -0.71
SHMT2-209ENST00000553949 OR6C6A6NF89 314 aa10.62□□□□□ -0.71
SHMT2-209ENST00000553949 A6NNC1 897 aa10.62□□□□□ -0.71
SHMT2-209ENST00000553949 DENRO43583 198 aaKnown RBP10.62□□□□□ -0.71
SHMT2-209ENST00000553949 COX5BP10606 129 aa10.62□□□□□ -0.71
SHMT2-209ENST00000553949 ALOX5APP20292 161 aa10.62□□□□□ -0.71
SHMT2-209ENST00000553949 STOMP27105 288 aa10.62□□□□□ -0.71
SHMT2-209ENST00000553949 APEX1P27695 318 aaKnown RBP10.62□□□□□ -0.71
SHMT2-209ENST00000553949 LOXP28300 417 aaPredicted RBP10.62□□□□□ -0.71
SHMT2-209ENST00000553949 HTR5AP47898 357 aa10.62□□□□□ -0.71
SHMT2-209ENST00000553949 NR1H2P55055 460 aa10.62□□□□□ -0.71
SHMT2-209ENST00000553949 NAAAQ02083 359 aa10.62□□□□□ -0.71
SHMT2-209ENST00000553949 NCMAPQ5T1S8 102 aa10.62□□□□□ -0.71
SHMT2-209ENST00000553949 SLC35F2Q8IXU6 374 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms