RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 EIF2S3LQ2VIR3 472 aaKnown RBP6.9□□□□□ -1.3
LIMA1-216ENST00000552909 PGGHGQ32M88 737 aa6.9□□□□□ -1.3
LIMA1-216ENST00000552909 ZNF750Q32MQ0 723 aa6.9□□□□□ -1.3
LIMA1-216ENST00000552909 DCAF12L2Q5VW00 463 aa6.9□□□□□ -1.3
LIMA1-216ENST00000552909 FAAP20Q6NZ36 180 aa6.9□□□□□ -1.3
LIMA1-216ENST00000552909 ZNF546Q86UE3 836 aa6.9□□□□□ -1.3
LIMA1-216ENST00000552909 NAA40Q86UY6 237 aa6.9□□□□□ -1.3
LIMA1-216ENST00000552909 GID4Q8IVV7 300 aa6.9□□□□□ -1.3
LIMA1-216ENST00000552909 WDSUB1Q8N9V3 476 aa6.9□□□□□ -1.3
LIMA1-216ENST00000552909 TNFAIP8L1Q8WVP5 186 aa6.9□□□□□ -1.3
LIMA1-216ENST00000552909 FAM46AQ96IP4 442 aaKnown RBP6.9□□□□□ -1.3
LIMA1-216ENST00000552909 BBS4Q96RK4 519 aa6.9□□□□□ -1.3
LIMA1-216ENST00000552909 MNTQ99583 582 aa6.9□□□□□ -1.3
LIMA1-216ENST00000552909 SMAD5Q99717 465 aaKnown RBP6.9□□□□□ -1.3
LIMA1-216ENST00000552909 TMEM185BQ9H7F4 350 aa6.9□□□□□ -1.3
LIMA1-216ENST00000552909 CNIH4Q9P003 139 aa6.9□□□□□ -1.3
LIMA1-216ENST00000552909 KLK11Q9UBX7 282 aa6.9□□□□□ -1.3
LIMA1-216ENST00000552909 A0A087WUU8 490 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 E9PI62 339 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 MKRN2OSH3BPM6 223 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 HMGN4O00479 90 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 IMPA2O14732 288 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 TBX19O60806 448 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 B4GALT2O60909 372 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 ARL6IP5O75915 188 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 COX6A1P12074 109 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 TLX1P31314 330 aaPredicted RBP6.89□□□□□ -1.31
LIMA1-216ENST00000552909 NPBWR1P48145 328 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 HCCSP53701 268 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 MRPS10P82664 201 aaKnown RBP6.89□□□□□ -1.31
LIMA1-216ENST00000552909 PRR5P85299 388 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 HSPB3Q12988 150 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 ACER2Q5QJU3 275 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 RAB12Q6IQ22 244 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 TMEM205Q6UW68 189 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 SLC36A1Q7Z2H8 476 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 COMTD1Q86VU5 262 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 CPOQ8IVL8 374 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 CCDC116Q8IYX3 515 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 GALNT16Q8N428 558 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 TMEM99Q8N816 258 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 CLEC1AQ8NC01 280 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 TMEM52Q8NDY8 209 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 OR10H4Q8NGA5 316 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 OR6T1Q8NGN1 323 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 OR5P2Q8WZ92 322 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 TSLPQ969D9 159 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 FER1L6-AS2Q96M78 137 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 IP6K3Q96PC2 410 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 RNF122Q9H9V4 155 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 ZNF160Q9HCG1 818 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 TMEM138Q9NPI0 162 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 ACSS1Q9NUB1 689 aaPredicted RBP6.89□□□□□ -1.31
LIMA1-216ENST00000552909 TUBD1Q9UJT1 453 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 CES1P1Q9UKY3 287 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 DAPP1Q9UN19 280 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 IGHV1-45A0A0A0MS14 117 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 A0A1W2PS29 197 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 BCL2L11O43521 198 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 ICOSLGO75144 302 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 SLC25A12O75746 678 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 SLC2A10O95528 541 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 RLN1P04808 185 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 UCHL1P09936 223 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 ABOP16442 354 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 DCTDP32321 178 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 FAUP35544 74 aaKnown RBP6.89□□□□□ -1.31
LIMA1-216ENST00000552909 ACVR1BP36896 505 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 BUD31P41223 144 aaPredicted RBP6.89□□□□□ -1.31
LIMA1-216ENST00000552909 RRADP55042 308 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 NRG3P56975 720 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 TAS2R41P59536 307 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 UBE2MP61081 183 aaKnown RBP6.89□□□□□ -1.31
LIMA1-216ENST00000552909 DEFA6Q01524 100 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 OR2B11Q5JQS5 317 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 SLC6A19Q695T7 634 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 SLC48A1Q6P1K1 146 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 ZCCHC12Q6PEW1 402 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 SYT9Q86SS6 491 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 MISPQ8IVT2 679 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 OR4N5Q8IXE1 308 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 CA13Q8N1Q1 262 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 MUC20Q8N307 709 aaPredicted RBP6.89□□□□□ -1.31
LIMA1-216ENST00000552909 KCNRGQ8N5I3 272 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 C17orf47Q8NEP4 570 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 PIGXQ8TBF5 258 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 WNT2BQ93097 391 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 RBM14Q96PK6 669 aaKnown RBP6.89□□□□□ -1.31
LIMA1-216ENST00000552909 PFDN5Q99471 154 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 TIMP4Q99727 224 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 WDR77Q9BQA1 342 aaPredicted RBP6.89□□□□□ -1.31
LIMA1-216ENST00000552909 ZNF471Q9BX82 626 aaPredicted RBP6.89□□□□□ -1.31
LIMA1-216ENST00000552909 SEC11CQ9BY50 192 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 TLNRD1Q9H1K6 362 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 ZNF552Q9H707 407 aaPredicted RBP6.89□□□□□ -1.31
LIMA1-216ENST00000552909 TCF7L1Q9HCS4 588 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 LYRM4Q9HD34 91 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 HINT3Q9NQE9 182 aaKnown RBP6.89□□□□□ -1.31
LIMA1-216ENST00000552909 INPP5EQ9NRR6 644 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 UFSP2Q9NUQ7 469 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms