RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 PRAMEF27A3QJZ7 478 aa14.74□□□□□ -0.05
CUX1-213ENST00000549414 BCKDHBP21953 392 aa14.74□□□□□ -0.05
CUX1-213ENST00000549414 CDKN2AP42771 156 aaKnown RBP14.74□□□□□ -0.05
CUX1-213ENST00000549414 ADGRE4PQ86SQ3 457 aa14.74□□□□□ -0.05
CUX1-213ENST00000549414 SGPP2Q8IWX5 399 aa14.74□□□□□ -0.05
CUX1-213ENST00000549414 FAM71CQ8NEG0 241 aa14.74□□□□□ -0.05
CUX1-213ENST00000549414 ASF1BQ9NVP2 202 aa14.74□□□□□ -0.05
CUX1-213ENST00000549414 HRH3Q9Y5N1 445 aa14.74□□□□□ -0.05
CUX1-213ENST00000549414 CCDC163A0A0D9SF12 145 aa14.74□□□□□ -0.05
CUX1-213ENST00000549414 GABARAPH6UMI1 98 aa14.74□□□□□ -0.05
CUX1-213ENST00000549414 ZFPL1O95159 310 aa14.74□□□□□ -0.05
CUX1-213ENST00000549414 CALCBP10092 127 aa14.74□□□□□ -0.05
CUX1-213ENST00000549414 IL32P24001 234 aa14.74□□□□□ -0.05
CUX1-213ENST00000549414 DCTDP32321 178 aa14.74□□□□□ -0.05
CUX1-213ENST00000549414 DDOSTP39656 456 aa14.74□□□□□ -0.05
CUX1-213ENST00000549414 CDC20Q12834 499 aa14.74□□□□□ -0.05
CUX1-213ENST00000549414 ARL6IP1Q15041 203 aa14.74□□□□□ -0.05
CUX1-213ENST00000549414 SMRP1Q8NCR6 262 aa14.74□□□□□ -0.05
CUX1-213ENST00000549414 CD300LFQ8TDQ1 290 aa14.74□□□□□ -0.05
CUX1-213ENST00000549414 NPAP1Q9NZP6 1156 aa14.74□□□□□ -0.05
CUX1-213ENST00000549414 CLEC1BQ9P126 229 aa14.74□□□□□ -0.05
CUX1-213ENST00000549414 FTCDNL1E5RQL4 147 aa14.74□□□□□ -0.05
CUX1-213ENST00000549414 FGF9P31371 208 aaPredicted RBP14.74□□□□□ -0.05
CUX1-213ENST00000549414 ETV6P41212 452 aa14.74□□□□□ -0.05
CUX1-213ENST00000549414 CAV2P51636 162 aa14.74□□□□□ -0.05
CUX1-213ENST00000549414 AKR1C2P52895 323 aa14.74□□□□□ -0.05
CUX1-213ENST00000549414 CDK10Q15131 360 aa14.74□□□□□ -0.05
CUX1-213ENST00000549414 ADGRL4Q9HBW9 690 aa14.74□□□□□ -0.05
CUX1-213ENST00000549414 LALBAP00709 142 aa14.74□□□□□ -0.05
CUX1-213ENST00000549414 PMP2P02689 132 aa14.74□□□□□ -0.05
CUX1-213ENST00000549414 TPOP07202 933 aa14.74□□□□□ -0.05
CUX1-213ENST00000549414 ENPP1P22413 925 aa14.74□□□□□ -0.05
CUX1-213ENST00000549414 SLC17A1Q14916 467 aa14.74□□□□□ -0.05
CUX1-213ENST00000549414 TOMM34Q15785 309 aaPredicted RBP14.74□□□□□ -0.05
CUX1-213ENST00000549414 EMC4Q5J8M3 183 aa14.74□□□□□ -0.05
CUX1-213ENST00000549414 LSRQ86X29 649 aaPredicted RBP14.74□□□□□ -0.05
CUX1-213ENST00000549414 MED18Q9BUE0 208 aa14.74□□□□□ -0.05
CUX1-213ENST00000549414 IGHV4-34P06331 123 aa14.73□□□□□ -0.05
CUX1-213ENST00000549414 APLNRP35414 380 aa14.73□□□□□ -0.05
CUX1-213ENST00000549414 CYB561P49447 251 aa14.73□□□□□ -0.05
CUX1-213ENST00000549414 MAP2K6P52564 334 aa14.73□□□□□ -0.05
CUX1-213ENST00000549414 ARSKQ6UWY0 536 aa14.73□□□□□ -0.05
CUX1-213ENST00000549414 LRRC46Q96FV0 321 aa14.73□□□□□ -0.05
CUX1-213ENST00000549414 BORCS7-ASMTA0A0B4J1R7 106 aa14.73□□□□□ -0.05
CUX1-213ENST00000549414 ARGFXA6NJG6 315 aa14.73□□□□□ -0.05
CUX1-213ENST00000549414 ZNF44P15621 663 aa14.73□□□□□ -0.05
CUX1-213ENST00000549414 VHLLQ6RSH7 139 aa14.73□□□□□ -0.05
CUX1-213ENST00000549414 SULF2Q8IWU5 870 aa14.73□□□□□ -0.05
CUX1-213ENST00000549414 BHLHE23Q8NDY6 225 aa14.73□□□□□ -0.05
CUX1-213ENST00000549414 CMSS1Q9BQ75 279 aaKnown RBP14.73□□□□□ -0.05
CUX1-213ENST00000549414 PIGQQ9BRB3 760 aa14.73□□□□□ -0.05
CUX1-213ENST00000549414 NOSIPQ9Y314 301 aaKnown RBP14.73□□□□□ -0.05
CUX1-213ENST00000549414 CHD5Q8TDI0 1954 aa14.73□□□□□ -0.05
CUX1-213ENST00000549414 NYNRINQ9P2P1 1898 aaKnown RBP14.73□□□□□ -0.05
CUX1-213ENST00000549414 LOC102725191A0A1B0GVB3 256 aa14.73□□□□□ -0.05
CUX1-213ENST00000549414 CCSO14618 274 aa14.73□□□□□ -0.05
CUX1-213ENST00000549414 GUSBP08236 651 aa14.73□□□□□ -0.05
CUX1-213ENST00000549414 CDAP32320 146 aa14.73□□□□□ -0.05
CUX1-213ENST00000549414 MNX1P50219 401 aaPredicted RBP14.73□□□□□ -0.05
CUX1-213ENST00000549414 NPSR1Q6W5P4 371 aa14.73□□□□□ -0.05
CUX1-213ENST00000549414 KCNG3Q8TAE7 436 aa14.73□□□□□ -0.05
CUX1-213ENST00000549414 ZNF764Q96H86 408 aaPredicted RBP14.73□□□□□ -0.05
CUX1-213ENST00000549414 TMEM9BQ9NQ34 198 aa14.73□□□□□ -0.05
CUX1-213ENST00000549414 SCN5AQ14524 2016 aa14.73□□□□□ -0.05
CUX1-213ENST00000549414 ZNF236Q9UL36 1845 aa14.73□□□□□ -0.05
CUX1-213ENST00000549414 EIF1BO60739 113 aaKnown RBP14.72□□□□□ -0.05
CUX1-213ENST00000549414 EPHA1P21709 976 aa14.72□□□□□ -0.05
CUX1-213ENST00000549414 GK2Q14410 553 aaPredicted RBP14.72□□□□□ -0.05
CUX1-213ENST00000549414 OPCMLQ14982 345 aa14.72□□□□□ -0.05
CUX1-213ENST00000549414 BCL2A1Q16548 175 aa14.72□□□□□ -0.05
CUX1-213ENST00000549414 ZNF585AQ6P3V2 769 aa14.72□□□□□ -0.05
CUX1-213ENST00000549414 DGAT2L6Q6ZPD8 337 aa14.72□□□□□ -0.05
CUX1-213ENST00000549414 PTP4A1Q93096 173 aa14.72□□□□□ -0.05
CUX1-213ENST00000549414 THOC3Q96J01 351 aaKnown RBP14.72□□□□□ -0.05
CUX1-213ENST00000549414 WNT16Q9UBV4 365 aa14.72□□□□□ -0.05
CUX1-213ENST00000549414 A0A0G2JMZ2 1700 aa14.72□□□□□ -0.05
CUX1-213ENST00000549414 A0A0A6YYJ9 748 aa14.72□□□□□ -0.05
CUX1-213ENST00000549414 YKT6O15498 198 aa14.72□□□□□ -0.05
CUX1-213ENST00000549414 NXPH1P58417 271 aa14.72□□□□□ -0.05
CUX1-213ENST00000549414 ST8SIA1Q92185 356 aa14.72□□□□□ -0.05
CUX1-213ENST00000549414 VSTM2LQ96N03 204 aa14.72□□□□□ -0.05
CUX1-213ENST00000549414 SYT3Q9BQG1 590 aa14.72□□□□□ -0.05
CUX1-213ENST00000549414 CD63P08962 238 aa14.72□□□□□ -0.05
CUX1-213ENST00000549414 GLI4P10075 376 aa14.72□□□□□ -0.05
CUX1-213ENST00000549414 TBXA2RP21731 343 aa14.72□□□□□ -0.05
CUX1-213ENST00000549414 CX3CR1P49238 355 aa14.72□□□□□ -0.05
CUX1-213ENST00000549414 CNN3Q15417 329 aaKnown RBP14.72□□□□□ -0.05
CUX1-213ENST00000549414 C2orf76Q3KRA6 126 aa14.72□□□□□ -0.05
CUX1-213ENST00000549414 MTCH2Q9Y6C9 303 aa14.72□□□□□ -0.05
CUX1-213ENST00000549414 AKR7A2O43488 359 aa14.72□□□□□ -0.05
CUX1-213ENST00000549414 TGFBR3Q03167 851 aa14.72□□□□□ -0.05
CUX1-213ENST00000549414 GJC3Q8NFK1 279 aa14.72□□□□□ -0.05
CUX1-213ENST00000549414 OR10G3Q8NGC4 313 aa14.72□□□□□ -0.05
CUX1-213ENST00000549414 OR56B1Q8NGI3 324 aa14.72□□□□□ -0.05
CUX1-213ENST00000549414 OR52N5Q8NH56 324 aa14.72□□□□□ -0.05
CUX1-213ENST00000549414 CPT1CQ8TCG5 803 aa14.72□□□□□ -0.05
CUX1-213ENST00000549414 NUDCD2Q8WVJ2 157 aa14.72□□□□□ -0.05
CUX1-213ENST00000549414 PPA2Q9H2U2 334 aa14.72□□□□□ -0.05
CUX1-213ENST00000549414 PLEKHB1Q9UF11 243 aaPredicted RBP14.72□□□□□ -0.05
CUX1-213ENST00000549414 GLS2Q9UI32 602 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms