RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 TMEM235A6NFC5 223 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 PRR19A6NJB7 356 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 GFYI3L273 518 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 SLC16A7O60669 478 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 TGM6O95932 706 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 GLULP15104 373 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 CSF2RBP32927 897 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 CLDN6P56747 220 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 STARD6P59095 220 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 TAS2R20P59543 309 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 RPS27AP62979 156 aaKnown RBP4.97□□□□□ -1.61
LIMA1-203ENST00000547825 UBA52P62987 128 aaKnown RBP4.97□□□□□ -1.61
LIMA1-203ENST00000547825 CSNK2A1P68400 391 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-203ENST00000547825 CD69Q07108 199 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 TRMT12Q53H54 448 aaKnown RBP4.97□□□□□ -1.61
LIMA1-203ENST00000547825 C9orf152Q5JTZ5 239 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 B3GNTL1Q67FW5 361 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-203ENST00000547825 AWAT2Q6E213 333 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 MBOAT2Q6ZWT7 520 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 ABHD13Q7L211 337 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 KCNRGQ8N5I3 272 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 CSNK2A3Q8NEV1 391 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 OR5T3Q8NGG3 340 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 OR4D11Q8NGI4 311 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 OR4D6Q8NGJ1 314 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 MMABQ96EY8 250 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-203ENST00000547825 GPA33Q99795 319 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 WDR77Q9BQA1 342 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-203ENST00000547825 ALG12Q9BV10 488 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 SLC46A2Q9BY10 475 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 SPHK1Q9NYA1 384 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 VSX1Q9NZR4 365 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-203ENST00000547825 GPR160Q9UJ42 338 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 A4GNTQ9UNA3 340 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 CA5BQ9Y2D0 317 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 PRELID3BQ9Y3B1 194 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 MED12Q93074 2177 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 HEATR5BQ9P2D3 2071 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 A0A0D9SG52 128 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 FAM74A7A6NL05 159 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 ZNF850A8MQ14 1090 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 B4DGG1 531 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 GABARAPH6UMI1 98 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 TRIM77I1YAP6 450 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 SGK494L7N484 410 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 IGLV3-27P01718 113 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 GIPP09681 153 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-203ENST00000547825 MAOAP21397 527 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 PRKAR1BP31321 381 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 ALDH3B1P43353 468 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 KIR2DL1P43626 348 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-203ENST00000547825 KIR2DL2P43627 348 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-203ENST00000547825 NPY4RP50391 375 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 RIDAP52758 137 aaKnown RBP4.97□□□□□ -1.61
LIMA1-203ENST00000547825 NKX6-1P78426 367 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-203ENST00000547825 CLEC12BQ2HXU8 276 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 FAM74A3Q4VXF1 159 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 DCST2Q5T1A1 773 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 RPL13AP3Q6NVV1 102 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 RPL22L1Q6P5R6 122 aaKnown RBP4.97□□□□□ -1.61
LIMA1-203ENST00000547825 ZNF620Q6ZNG0 422 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 ERN2Q76MJ5 926 aaKnown RBP4.97□□□□□ -1.61
LIMA1-203ENST00000547825 CPXM2Q8N436 756 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 PPP1R1CQ8WVI7 109 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 RBP7Q96R05 134 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 PLA2G2FQ9BZM2 168 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 ST6GALNAC1Q9NSC7 600 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-203ENST00000547825 TMEM131Q92545 1883 aa4.97□□□□□ -1.61
LIMA1-203ENST00000547825 MEIKINA0A087WXM9 373 aa4.96□□□□□ -1.61
LIMA1-203ENST00000547825 BORCS7-ASMTA0A0B4J1R7 106 aa4.96□□□□□ -1.61
LIMA1-203ENST00000547825 A0A1B0GWA3 101 aa4.96□□□□□ -1.61
LIMA1-203ENST00000547825 OR2W5A6NFC9 320 aa4.96□□□□□ -1.61
LIMA1-203ENST00000547825 NUDT19A8MXV4 375 aa4.96□□□□□ -1.61
LIMA1-203ENST00000547825 MCRIP1C9JLW8 97 aa4.96□□□□□ -1.61
LIMA1-203ENST00000547825 NPIPA5E9PKD4 350 aa4.96□□□□□ -1.61
LIMA1-203ENST00000547825 FOXE1O00358 373 aaPredicted RBP4.96□□□□□ -1.61
LIMA1-203ENST00000547825 SLCO2B1O94956 709 aa4.96□□□□□ -1.61
LIMA1-203ENST00000547825 IFNA17P01571 189 aa4.96□□□□□ -1.61
LIMA1-203ENST00000547825 RAB40ALP0C0E4 278 aa4.96□□□□□ -1.61
LIMA1-203ENST00000547825 DAOP14920 347 aa4.96□□□□□ -1.61
LIMA1-203ENST00000547825 HIST1H1CP16403 213 aaKnown RBP4.96□□□□□ -1.61
LIMA1-203ENST00000547825 FPR3P25089 353 aa4.96□□□□□ -1.61
LIMA1-203ENST00000547825 IDH3GP51553 393 aaPredicted RBP4.96□□□□□ -1.61
LIMA1-203ENST00000547825 RAE1P78406 368 aaKnown RBP4.96□□□□□ -1.61
LIMA1-203ENST00000547825 CAMK2DQ13557 499 aa4.96□□□□□ -1.61
LIMA1-203ENST00000547825 PDE7AQ13946 482 aa4.96□□□□□ -1.61
LIMA1-203ENST00000547825 SSX2Q16385 188 aa4.96□□□□□ -1.61
LIMA1-203ENST00000547825 DECR1Q16698 335 aa4.96□□□□□ -1.61
LIMA1-203ENST00000547825 MEX3BQ6ZN04 569 aaKnown RBP4.96□□□□□ -1.61
LIMA1-203ENST00000547825 ADGRG3Q86Y34 549 aa4.96□□□□□ -1.61
LIMA1-203ENST00000547825 OR4S1Q8NGB4 309 aa4.96□□□□□ -1.61
LIMA1-203ENST00000547825 OR4C16Q8NGL9 310 aa4.96□□□□□ -1.61
LIMA1-203ENST00000547825 RAB40AQ8WXH6 277 aa4.96□□□□□ -1.61
LIMA1-203ENST00000547825 ELSPBP1Q96BH3 223 aa4.96□□□□□ -1.61
LIMA1-203ENST00000547825 LURAP1Q96LR2 239 aa4.96□□□□□ -1.61
LIMA1-203ENST00000547825 MS4A4EQ96PG1 132 aa4.96□□□□□ -1.61
LIMA1-203ENST00000547825 PIGQQ9BRB3 760 aa4.96□□□□□ -1.61
LIMA1-203ENST00000547825 MS4A8Q9BY19 250 aa4.96□□□□□ -1.61
LIMA1-203ENST00000547825 EPHX3Q9H6B9 360 aa4.96□□□□□ -1.61
LIMA1-203ENST00000547825 NCDNQ9UBB6 729 aa4.96□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms