RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 B3GAT1Q9P2W7 334 aa16.1■□□□□ 0.17
VIM-209ENST00000544301 WIF1Q9Y5W5 379 aa16.1■□□□□ 0.17
VIM-209ENST00000544301 A0A1W2PNV4 684 aa16.09■□□□□ 0.17
VIM-209ENST00000544301 A0A1W2PQ72 361 aa16.09■□□□□ 0.17
VIM-209ENST00000544301 HRGP04196 525 aa16.09■□□□□ 0.17
VIM-209ENST00000544301 CSF1P09603 554 aa16.09■□□□□ 0.17
VIM-209ENST00000544301 ACHEP22303 614 aa16.09■□□□□ 0.17
VIM-209ENST00000544301 DNASE1P24855 282 aa16.09■□□□□ 0.17
VIM-209ENST00000544301 MECP2P51608 486 aaKnown RBP16.09■□□□□ 0.17
VIM-209ENST00000544301 OR4C16Q8NGL9 310 aa16.09■□□□□ 0.17
VIM-209ENST00000544301 ATG5Q9H1Y0 275 aa16.09■□□□□ 0.17
VIM-209ENST00000544301 METTL17Q9H7H0 456 aaPredicted RBP16.09■□□□□ 0.17
VIM-209ENST00000544301 SDHAF3Q9NRP4 125 aa16.09■□□□□ 0.17
VIM-209ENST00000544301 OCIAD1Q9NX40 245 aa16.09■□□□□ 0.17
VIM-209ENST00000544301 TAS2R8Q9NYW2 309 aa16.09■□□□□ 0.17
VIM-209ENST00000544301 KLHL13Q9P2N7 655 aa16.09■□□□□ 0.17
VIM-209ENST00000544301 PILRBQ9UKJ0 227 aa16.09■□□□□ 0.17
VIM-209ENST00000544301 B3GALT1Q9Y5Z6 326 aa16.09■□□□□ 0.17
VIM-209ENST00000544301 PI4KAP42356 2102 aa16.09■□□□□ 0.17
VIM-209ENST00000544301 TMEM269A0A1B0GVZ9 245 aa16.09■□□□□ 0.17
VIM-209ENST00000544301 IL5P05113 134 aa16.09■□□□□ 0.17
VIM-209ENST00000544301 HTR2CP28335 458 aa16.09■□□□□ 0.17
VIM-209ENST00000544301 FAUP35544 74 aaKnown RBP16.09■□□□□ 0.17
VIM-209ENST00000544301 DNASE1L1P49184 302 aa16.09■□□□□ 0.17
VIM-209ENST00000544301 PER3P56645 1201 aa16.09■□□□□ 0.17
VIM-209ENST00000544301 TOMM20Q15388 145 aa16.09■□□□□ 0.17
VIM-209ENST00000544301 INPP5JQ15735 1006 aaPredicted RBP16.09■□□□□ 0.17
VIM-209ENST00000544301 GLYATL3Q5SZD4 288 aa16.09■□□□□ 0.17
VIM-209ENST00000544301 PMS2CLQ68D20 193 aa16.09■□□□□ 0.17
VIM-209ENST00000544301 ZNF704Q6ZNC4 412 aaPredicted RBP16.09■□□□□ 0.17
VIM-209ENST00000544301 BPHLQ86WA6 291 aaPredicted RBP16.09■□□□□ 0.17
VIM-209ENST00000544301 OR8H1Q8NGG4 311 aa16.09■□□□□ 0.17
VIM-209ENST00000544301 OR51A2Q8NGJ7 313 aa16.09■□□□□ 0.17
VIM-209ENST00000544301 RNF133Q8WVZ7 376 aa16.09■□□□□ 0.17
VIM-209ENST00000544301 C11orf40Q8WZ69 217 aa16.09■□□□□ 0.17
VIM-209ENST00000544301 C19orf25Q9UFG5 118 aaPredicted RBP16.09■□□□□ 0.17
VIM-209ENST00000544301 CGGBP1Q9UFW8 167 aaPredicted RBP16.09■□□□□ 0.17
VIM-209ENST00000544301 RPH3AQ9Y2J0 694 aaPredicted RBP16.09■□□□□ 0.17
VIM-209ENST00000544301 KIF26BQ2KJY2 2108 aa16.08■□□□□ 0.16
VIM-209ENST00000544301 LOC101059948A0A1B0GTJ6 334 aa16.08■□□□□ 0.16
VIM-209ENST00000544301 G3V3Q6 166 aa16.08■□□□□ 0.16
VIM-209ENST00000544301 MEN1O00255 615 aa16.08■□□□□ 0.16
VIM-209ENST00000544301 TPOP07202 933 aa16.08■□□□□ 0.16
VIM-209ENST00000544301 H2BFMP0C1H6 154 aa16.08■□□□□ 0.16
VIM-209ENST00000544301 PRSS3P35030 304 aa16.08■□□□□ 0.16
VIM-209ENST00000544301 GNG2P59768 71 aa16.08■□□□□ 0.16
VIM-209ENST00000544301 OR2T35Q8NGX2 323 aa16.08■□□□□ 0.16
VIM-209ENST00000544301 SLC22A8Q8TCC7 542 aa16.08■□□□□ 0.16
VIM-209ENST00000544301 CENPMQ9NSP4 180 aa16.08■□□□□ 0.16
VIM-209ENST00000544301 MRPS18BQ9Y676 258 aaKnown RBP16.08■□□□□ 0.16
VIM-209ENST00000544301 LMX1BO60663 402 aa16.07■□□□□ 0.16
VIM-209ENST00000544301 DKK1O94907 266 aa16.07■□□□□ 0.16
VIM-209ENST00000544301 OPN1LWP04000 364 aa16.07■□□□□ 0.16
VIM-209ENST00000544301 LGALSLQ3ZCW2 172 aaPredicted RBP16.07■□□□□ 0.16
VIM-209ENST00000544301 PHF19Q5T6S3 580 aa16.07■□□□□ 0.16
VIM-209ENST00000544301 MRPL14Q6P1L8 145 aaKnown RBP16.07■□□□□ 0.16
VIM-209ENST00000544301 HIST2H2ABQ8IUE6 130 aaPredicted RBP16.07■□□□□ 0.16
VIM-209ENST00000544301 OR2M3Q8NG83 312 aa16.07■□□□□ 0.16
VIM-209ENST00000544301 OR4D10Q8NGI6 311 aa16.07■□□□□ 0.16
VIM-209ENST00000544301 OR6M1Q8NGM8 313 aa16.07■□□□□ 0.16
VIM-209ENST00000544301 RASL10BQ96S79 203 aa16.07■□□□□ 0.16
VIM-209ENST00000544301 MRPL13Q9BYD1 178 aaKnown RBP16.07■□□□□ 0.16
VIM-209ENST00000544301 ZNF69Q9UC07 566 aa16.07■□□□□ 0.16
VIM-209ENST00000544301 FBXL2Q9UKC9 423 aa16.07■□□□□ 0.16
VIM-209ENST00000544301 DCDC2BA2VCK2 349 aa16.07■□□□□ 0.16
VIM-209ENST00000544301 MEGF11A6BM72 1044 aa16.07■□□□□ 0.16
VIM-209ENST00000544301 MEIS3P1A6NDR6 274 aa16.07■□□□□ 0.16
VIM-209ENST00000544301 PYCARD-AS1I3L0S3 204 aa16.07■□□□□ 0.16
VIM-209ENST00000544301 EIF1AYO14602 144 aaKnown RBP16.07■□□□□ 0.16
VIM-209ENST00000544301 CPN1P15169 458 aa16.07■□□□□ 0.16
VIM-209ENST00000544301 FOXK1P85037 733 aa16.07■□□□□ 0.16
VIM-209ENST00000544301 SPOCK1Q08629 439 aa16.07■□□□□ 0.16
VIM-209ENST00000544301 ZBTB37Q5TC79 503 aa16.07■□□□□ 0.16
VIM-209ENST00000544301 TMEM244Q5VVB8 128 aa16.07■□□□□ 0.16
VIM-209ENST00000544301 ZNF626Q68DY1 528 aa16.07■□□□□ 0.16
VIM-209ENST00000544301 SPICQ8N5J4 248 aa16.07■□□□□ 0.16
VIM-209ENST00000544301 OR5M1Q8NGP8 315 aa16.07■□□□□ 0.16
VIM-209ENST00000544301 NAT6Q93015 286 aa16.07■□□□□ 0.16
VIM-209ENST00000544301 RBP7Q96R05 134 aa16.07■□□□□ 0.16
VIM-209ENST00000544301 DEFB126Q9BYW3 111 aa16.07■□□□□ 0.16
VIM-209ENST00000544301 HEXA-AS1Q9H8Q6 139 aa16.07■□□□□ 0.16
VIM-209ENST00000544301 MGAT4CQ9UBM8 478 aa16.07■□□□□ 0.16
VIM-209ENST00000544301 ELF5Q9UKW6 265 aaPredicted RBP16.07■□□□□ 0.16
VIM-209ENST00000544301 SNRPGP15A8MWD9 76 aa16.06■□□□□ 0.16
VIM-209ENST00000544301 P2RY10O00398 339 aa16.06■□□□□ 0.16
VIM-209ENST00000544301 CREBL2O60519 120 aaPredicted RBP16.06■□□□□ 0.16
VIM-209ENST00000544301 UBCP0CG48 685 aaKnown RBP16.06■□□□□ 0.16
VIM-209ENST00000544301 GTF2F2P13984 249 aa16.06■□□□□ 0.16
VIM-209ENST00000544301 MMP16P51512 607 aa16.06■□□□□ 0.16
VIM-209ENST00000544301 P2RY4P51582 365 aa16.06■□□□□ 0.16
VIM-209ENST00000544301 RBMS2Q15434 407 aaKnown RBP16.06■□□□□ 0.16
VIM-209ENST00000544301 CSRP2Q16527 193 aa16.06■□□□□ 0.16
VIM-209ENST00000544301 C3orf33Q6P1S2 294 aa16.06■□□□□ 0.16
VIM-209ENST00000544301 TEX261Q6UWH6 196 aa16.06■□□□□ 0.16
VIM-209ENST00000544301 MEIOBQ8N635 442 aa16.06■□□□□ 0.16
VIM-209ENST00000544301 OR10H5Q8NGA6 315 aa16.06■□□□□ 0.16
VIM-209ENST00000544301 SLAMF6Q96DU3 332 aa16.06■□□□□ 0.16
VIM-209ENST00000544301 SPACA9Q96E40 222 aaPredicted RBP16.06■□□□□ 0.16
VIM-209ENST00000544301 TMEM185BQ9H7F4 350 aa16.06■□□□□ 0.16
VIM-209ENST00000544301 GPN1Q9HCN4 374 aaPredicted RBP16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms