RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 SH3BGRP55822 239 aaPredicted RBP8.16□□□□□ -1.1
DDX55-208ENST00000541259 LSM6P62312 80 aaKnown RBP8.16□□□□□ -1.1
DDX55-208ENST00000541259 CSNK2BP67870 215 aa8.16□□□□□ -1.1
DDX55-208ENST00000541259 SLC35A2P78381 396 aa8.16□□□□□ -1.1
DDX55-208ENST00000541259 RAB40BQ12829 278 aa8.16□□□□□ -1.1
DDX55-208ENST00000541259 EIF2B1Q14232 305 aaKnown RBP8.16□□□□□ -1.1
DDX55-208ENST00000541259 P2RY6Q15077 328 aa8.16□□□□□ -1.1
DDX55-208ENST00000541259 PCK2Q16822 640 aa8.16□□□□□ -1.1
DDX55-208ENST00000541259 SLC25A35Q3KQZ1 300 aa8.16□□□□□ -1.1
DDX55-208ENST00000541259 TBRG1Q3YBR2 411 aa8.16□□□□□ -1.1
DDX55-208ENST00000541259 KLHL22Q53GT1 634 aa8.16□□□□□ -1.1
DDX55-208ENST00000541259 ANKRD16Q6P6B7 361 aa8.16□□□□□ -1.1
DDX55-208ENST00000541259 TMEM154Q6P9G4 183 aa8.16□□□□□ -1.1
DDX55-208ENST00000541259 C22orf34Q6ZV56 151 aa8.16□□□□□ -1.1
DDX55-208ENST00000541259 SSX6Q7RTT6 188 aa8.16□□□□□ -1.1
DDX55-208ENST00000541259 SLC16A14Q7RTX9 510 aa8.16□□□□□ -1.1
DDX55-208ENST00000541259 OR10H4Q8NGA5 316 aa8.16□□□□□ -1.1
DDX55-208ENST00000541259 CA5BP1Q8WTZ4 195 aa8.16□□□□□ -1.1
DDX55-208ENST00000541259 S100PBPQ96BU1 408 aa8.16□□□□□ -1.1
DDX55-208ENST00000541259 ZNF649Q9BS31 505 aa8.16□□□□□ -1.1
DDX55-208ENST00000541259 COPS4Q9BT78 406 aa8.16□□□□□ -1.1
DDX55-208ENST00000541259 CDADC1Q9BWV3 514 aa8.16□□□□□ -1.1
DDX55-208ENST00000541259 YTHDF1Q9BYJ9 559 aaKnown RBP8.16□□□□□ -1.1
DDX55-208ENST00000541259 DUSP21Q9H596 190 aa8.16□□□□□ -1.1
DDX55-208ENST00000541259 NOX3Q9HBY0 568 aa8.16□□□□□ -1.1
DDX55-208ENST00000541259 FGF20Q9NP95 211 aaPredicted RBP8.16□□□□□ -1.1
DDX55-208ENST00000541259 ELOVL5Q9NYP7 299 aa8.16□□□□□ -1.1
DDX55-208ENST00000541259 CNOT2Q9NZN8 540 aaKnown RBP8.16□□□□□ -1.1
DDX55-208ENST00000541259 ASH2LQ9UBL3 628 aa8.16□□□□□ -1.1
DDX55-208ENST00000541259 CYB5R1Q9UHQ9 305 aa8.16□□□□□ -1.1
DDX55-208ENST00000541259 TPRKBQ9Y3C4 175 aa8.16□□□□□ -1.1
DDX55-208ENST00000541259 A0A1W2PQL4 384 aaPredicted RBP8.15□□□□□ -1.1
DDX55-208ENST00000541259 EFCAB10A6NFE3 127 aa8.15□□□□□ -1.1
DDX55-208ENST00000541259 C12orf71A8MTZ7 269 aa8.15□□□□□ -1.1
DDX55-208ENST00000541259 PSMD9O00233 223 aa8.15□□□□□ -1.1
DDX55-208ENST00000541259 RER1O15258 196 aa8.15□□□□□ -1.1
DDX55-208ENST00000541259 AGFG2O95081 481 aa8.15□□□□□ -1.1
DDX55-208ENST00000541259 FARS2O95363 451 aaKnown RBP8.15□□□□□ -1.1
DDX55-208ENST00000541259 RAB36O95755 333 aa8.15□□□□□ -1.1
DDX55-208ENST00000541259 IGHA1P01876 353 aa8.15□□□□□ -1.1
DDX55-208ENST00000541259 MT-ND2P03891 347 aa8.15□□□□□ -1.1
DDX55-208ENST00000541259 CDK1P06493 297 aa8.15□□□□□ -1.1
DDX55-208ENST00000541259 MMP7P09237 267 aaPredicted RBP8.15□□□□□ -1.1
DDX55-208ENST00000541259 LIMS3P0CW19 117 aa8.15□□□□□ -1.1
DDX55-208ENST00000541259 LIMS4P0CW20 117 aa8.15□□□□□ -1.1
DDX55-208ENST00000541259 CD79AP11912 226 aa8.15□□□□□ -1.1
DDX55-208ENST00000541259 PIPP12273 146 aaPredicted RBP8.15□□□□□ -1.1
DDX55-208ENST00000541259 PLA2G2AP14555 144 aa8.15□□□□□ -1.1
DDX55-208ENST00000541259 ZNF32P17041 273 aa8.15□□□□□ -1.1
DDX55-208ENST00000541259 PSMB1P20618 241 aaKnown RBP8.15□□□□□ -1.1
DDX55-208ENST00000541259 EEF1B2P24534 225 aaKnown RBP8.15□□□□□ -1.1
DDX55-208ENST00000541259 UGT2B10P36537 528 aa8.15□□□□□ -1.1
DDX55-208ENST00000541259 CAPZA2P47755 286 aa8.15□□□□□ -1.1
DDX55-208ENST00000541259 ETV1P50549 477 aa8.15□□□□□ -1.1
DDX55-208ENST00000541259 HIST1H3AP68431 136 aa8.15□□□□□ -1.1
DDX55-208ENST00000541259 TGFBR3Q03167 851 aa8.15□□□□□ -1.1
DDX55-208ENST00000541259 ZNF85Q03923 595 aa8.15□□□□□ -1.1
DDX55-208ENST00000541259 SNTB1Q13884 538 aaKnown RBP8.15□□□□□ -1.1
DDX55-208ENST00000541259 CCDC92Q53HC0 331 aaPredicted RBP8.15□□□□□ -1.1
DDX55-208ENST00000541259 TEX30Q5JUR7 227 aa8.15□□□□□ -1.1
DDX55-208ENST00000541259 HIST2H3PS2Q5TEC6 136 aa8.15□□□□□ -1.1
DDX55-208ENST00000541259 SLC18B1Q6NT16 456 aa8.15□□□□□ -1.1
DDX55-208ENST00000541259 CFAP77Q6ZQR2 320 aa8.15□□□□□ -1.1
DDX55-208ENST00000541259 HIST2H3AQ71DI3 136 aa8.15□□□□□ -1.1
DDX55-208ENST00000541259 SPATC1Q76KD6 591 aa8.15□□□□□ -1.1
DDX55-208ENST00000541259 DCXRQ7Z4W1 244 aa8.15□□□□□ -1.1
DDX55-208ENST00000541259 LHFPL3Q86UP9 236 aa8.15□□□□□ -1.1
DDX55-208ENST00000541259 STX19Q8N4C7 294 aa8.15□□□□□ -1.1
DDX55-208ENST00000541259 ZNF808Q8N4W9 903 aaPredicted RBP8.15□□□□□ -1.1
DDX55-208ENST00000541259 OR10S1Q8NGN2 331 aa8.15□□□□□ -1.1
DDX55-208ENST00000541259 OR52N5Q8NH56 324 aa8.15□□□□□ -1.1
DDX55-208ENST00000541259 OTOSQ8NHW6 89 aa8.15□□□□□ -1.1
DDX55-208ENST00000541259 ST7LQ8TDW4 575 aa8.15□□□□□ -1.1
DDX55-208ENST00000541259 TMEM80Q96HE8 168 aa8.15□□□□□ -1.1
DDX55-208ENST00000541259 BOD1Q96IK1 185 aa8.15□□□□□ -1.1
DDX55-208ENST00000541259 MAP6Q96JE9 813 aa8.15□□□□□ -1.1
DDX55-208ENST00000541259 NR1H4Q96RI1 486 aaPredicted RBP8.15□□□□□ -1.1
DDX55-208ENST00000541259 CITED4Q96RK1 184 aa8.15□□□□□ -1.1
DDX55-208ENST00000541259 ABHD6Q9BV23 337 aa8.15□□□□□ -1.1
DDX55-208ENST00000541259 C1QTNF6Q9BXI9 259 aa8.15□□□□□ -1.1
DDX55-208ENST00000541259 YIPF3Q9GZM5 350 aa8.15□□□□□ -1.1
DDX55-208ENST00000541259 KCNJ16Q9NPI9 418 aa8.15□□□□□ -1.1
DDX55-208ENST00000541259 SLC17A5Q9NRA2 495 aa8.15□□□□□ -1.1
DDX55-208ENST00000541259 B3GNT2Q9NY97 397 aa8.15□□□□□ -1.1
DDX55-208ENST00000541259 CLEC2DQ9UHP7 191 aa8.15□□□□□ -1.1
DDX55-208ENST00000541259 GDF2Q9UK05 429 aaPredicted RBP8.15□□□□□ -1.1
DDX55-208ENST00000541259 DIMT1Q9UNQ2 313 aaKnown RBP8.15□□□□□ -1.1
DDX55-208ENST00000541259 POLR1DQ9Y2S0 133 aa8.15□□□□□ -1.1
DDX55-208ENST00000541259 DAPL1A0PJW8 107 aa8.14□□□□□ -1.11
DDX55-208ENST00000541259 TRIM64A6NGJ6 449 aa8.14□□□□□ -1.11
DDX55-208ENST00000541259 ZNF670-ZNF695F2Z2N8 137 aa8.14□□□□□ -1.11
DDX55-208ENST00000541259 C16orf97H3BN30 126 aa8.14□□□□□ -1.11
DDX55-208ENST00000541259 RGS10O43665 173 aa8.14□□□□□ -1.11
DDX55-208ENST00000541259 CLDN14O95500 239 aa8.14□□□□□ -1.11
DDX55-208ENST00000541259 FADS2O95864 444 aaKnown RBP8.14□□□□□ -1.11
DDX55-208ENST00000541259 LYNP07948 512 aa8.14□□□□□ -1.11
DDX55-208ENST00000541259 RPSAP08865 295 aaKnown RBP8.14□□□□□ -1.11
DDX55-208ENST00000541259 OR2T7P0C7T2 308 aa8.14□□□□□ -1.11
DDX55-208ENST00000541259 ALOX5APP20292 161 aa8.14□□□□□ -1.11
DDX55-208ENST00000541259 IL32P24001 234 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms