RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 NUP210LQ5VU65 1888 aa11.24□□□□□ -0.61
RNF4-222ENST00000541204 FOSL2P15408 326 aa11.24□□□□□ -0.61
RNF4-222ENST00000541204 CALCRP30988 508 aa11.24□□□□□ -0.61
RNF4-222ENST00000541204 RAB11BQ15907 218 aa11.24□□□□□ -0.61
RNF4-222ENST00000541204 ASPHD2Q6ICH7 369 aa11.24□□□□□ -0.61
RNF4-222ENST00000541204 STEAP1BQ6NZ63 245 aa11.24□□□□□ -0.61
RNF4-222ENST00000541204 OVCH2Q7RTZ1 564 aa11.24□□□□□ -0.61
RNF4-222ENST00000541204 OTOSQ8NHW6 89 aa11.24□□□□□ -0.61
RNF4-222ENST00000541204 FBXL2Q9UKC9 423 aa11.24□□□□□ -0.61
RNF4-222ENST00000541204 TMEM14AQ9Y6G1 99 aa11.24□□□□□ -0.61
RNF4-222ENST00000541204 FER1L5A0AVI2 2057 aa11.24□□□□□ -0.61
RNF4-222ENST00000541204 CEP192Q8TEP8 1941 aa11.24□□□□□ -0.61
RNF4-222ENST00000541204 KRBOX1C9JBD0 128 aa11.24□□□□□ -0.61
RNF4-222ENST00000541204 NUPL2O15504 423 aaKnown RBP11.24□□□□□ -0.61
RNF4-222ENST00000541204 GDF9O60383 454 aa11.24□□□□□ -0.61
RNF4-222ENST00000541204 WNT11O96014 354 aa11.24□□□□□ -0.61
RNF4-222ENST00000541204 PNPP00491 289 aa11.24□□□□□ -0.61
RNF4-222ENST00000541204 GMFBP60983 142 aa11.24□□□□□ -0.61
RNF4-222ENST00000541204 BIKQ13323 160 aa11.24□□□□□ -0.61
RNF4-222ENST00000541204 EMC4Q5J8M3 183 aa11.24□□□□□ -0.61
RNF4-222ENST00000541204 ARSKQ6UWY0 536 aa11.24□□□□□ -0.61
RNF4-222ENST00000541204 KRT77Q7Z794 578 aa11.24□□□□□ -0.61
RNF4-222ENST00000541204 KDM8Q8N371 416 aa11.24□□□□□ -0.61
RNF4-222ENST00000541204 CLEC1AQ8NC01 280 aa11.24□□□□□ -0.61
RNF4-222ENST00000541204 LAT2Q9GZY6 243 aa11.24□□□□□ -0.61
RNF4-222ENST00000541204 MFFQ9GZY8 342 aa11.24□□□□□ -0.61
RNF4-222ENST00000541204 DUSP15Q9H1R2 295 aaPredicted RBP11.24□□□□□ -0.61
RNF4-222ENST00000541204 LOC100289279A0A1B0GTE1 492 aa11.23□□□□□ -0.61
RNF4-222ENST00000541204 SMAD9O15198 467 aaKnown RBP11.23□□□□□ -0.61
RNF4-222ENST00000541204 TSPAN2O60636 221 aa11.23□□□□□ -0.61
RNF4-222ENST00000541204 ZNF354AO60765 605 aaPredicted RBP11.23□□□□□ -0.61
RNF4-222ENST00000541204 SLC25A12O75746 678 aa11.23□□□□□ -0.61
RNF4-222ENST00000541204 PDGFBP01127 241 aaPredicted RBP11.23□□□□□ -0.61
RNF4-222ENST00000541204 RLN2P04090 185 aa11.23□□□□□ -0.61
RNF4-222ENST00000541204 FGF2P09038 288 aa11.23□□□□□ -0.61
RNF4-222ENST00000541204 LYSMD4Q5XG99 296 aa11.23□□□□□ -0.61
RNF4-222ENST00000541204 COX15Q7KZN9 410 aa11.23□□□□□ -0.61
RNF4-222ENST00000541204 TMED4Q7Z7H5 227 aa11.23□□□□□ -0.61
RNF4-222ENST00000541204 CDH26Q8IXH8 852 aa11.23□□□□□ -0.61
RNF4-222ENST00000541204 PDZD9Q8IXQ8 264 aa11.23□□□□□ -0.61
RNF4-222ENST00000541204 ZNF454Q8N9F8 522 aa11.23□□□□□ -0.61
RNF4-222ENST00000541204 BVESQ8NE79 360 aa11.23□□□□□ -0.61
RNF4-222ENST00000541204 CCNL2Q96S94 520 aaPredicted RBP11.23□□□□□ -0.61
RNF4-222ENST00000541204 NPAS1Q99742 590 aa11.23□□□□□ -0.61
RNF4-222ENST00000541204 ZNF230Q9UIE0 474 aaPredicted RBP11.23□□□□□ -0.61
RNF4-222ENST00000541204 GPR160Q9UJ42 338 aa11.23□□□□□ -0.61
RNF4-222ENST00000541204 CACNA1EQ15878 2313 aa11.23□□□□□ -0.61
RNF4-222ENST00000541204 M0QYG6 137 aa11.23□□□□□ -0.61
RNF4-222ENST00000541204 SLC17A2O00624 439 aa11.23□□□□□ -0.61
RNF4-222ENST00000541204 FBXW4P57775 412 aa11.23□□□□□ -0.61
RNF4-222ENST00000541204 CCL7P80098 99 aa11.23□□□□□ -0.61
RNF4-222ENST00000541204 WDR74Q6RFH5 385 aaPredicted RBP11.23□□□□□ -0.61
RNF4-222ENST00000541204 TMEM205Q6UW68 189 aa11.23□□□□□ -0.61
RNF4-222ENST00000541204 GABRG1Q8N1C3 465 aa11.23□□□□□ -0.61
RNF4-222ENST00000541204 RELL2Q8NC24 303 aaPredicted RBP11.23□□□□□ -0.61
RNF4-222ENST00000541204 OR1J4Q8NGS1 313 aa11.23□□□□□ -0.61
RNF4-222ENST00000541204 C8orf44Q96CB5 159 aa11.23□□□□□ -0.61
RNF4-222ENST00000541204 MYEF2Q9P2K5 600 aaKnown RBP11.23□□□□□ -0.61
RNF4-222ENST00000541204 SIGLEC6O43699 453 aa11.22□□□□□ -0.61
RNF4-222ENST00000541204 OR4E1P0C645 316 aa11.22□□□□□ -0.61
RNF4-222ENST00000541204 GP1BBP13224 206 aa11.22□□□□□ -0.61
RNF4-222ENST00000541204 CTRB1P17538 263 aa11.22□□□□□ -0.61
RNF4-222ENST00000541204 CTRB2Q6GPI1 263 aa11.22□□□□□ -0.61
RNF4-222ENST00000541204 ZNF627Q7L945 461 aa11.22□□□□□ -0.61
RNF4-222ENST00000541204 OR5M9Q8NGP3 310 aa11.22□□□□□ -0.61
RNF4-222ENST00000541204 CLDN23Q96B33 292 aa11.22□□□□□ -0.61
RNF4-222ENST00000541204 OR8B4Q96RC9 309 aa11.22□□□□□ -0.61
RNF4-222ENST00000541204 MNTQ99583 582 aa11.22□□□□□ -0.61
RNF4-222ENST00000541204 ZNF768Q9H5H4 540 aaKnown RBP11.22□□□□□ -0.61
RNF4-222ENST00000541204 ZMAT3Q9HA38 289 aaKnown RBP11.22□□□□□ -0.61
RNF4-222ENST00000541204 PCNX3Q9H6A9 2034 aa11.22□□□□□ -0.61
RNF4-222ENST00000541204 FREM2Q5SZK8 3169 aa11.22□□□□□ -0.61
RNF4-222ENST00000541204 A0A1W2PQM1 296 aa11.22□□□□□ -0.61
RNF4-222ENST00000541204 XKRYO14609 159 aa11.22□□□□□ -0.61
RNF4-222ENST00000541204 DOK2O60496 412 aa11.22□□□□□ -0.61
RNF4-222ENST00000541204 ITGB2P05107 769 aa11.22□□□□□ -0.61
RNF4-222ENST00000541204 CFIP05156 583 aa11.22□□□□□ -0.61
RNF4-222ENST00000541204 HEXBP07686 556 aa11.22□□□□□ -0.61
RNF4-222ENST00000541204 SPARCP09486 303 aa11.22□□□□□ -0.61
RNF4-222ENST00000541204 NAGAP17050 411 aa11.22□□□□□ -0.61
RNF4-222ENST00000541204 MPGP29372 298 aa11.22□□□□□ -0.61
RNF4-222ENST00000541204 RNF4P78317 190 aa11.22□□□□□ -0.61
RNF4-222ENST00000541204 SLC17A1Q14916 467 aa11.22□□□□□ -0.61
RNF4-222ENST00000541204 ETFDHQ16134 617 aa11.22□□□□□ -0.61
RNF4-222ENST00000541204 NDUFAF7Q7L592 441 aa11.22□□□□□ -0.61
RNF4-222ENST00000541204 MDGA2Q7Z553 956 aa11.22□□□□□ -0.61
RNF4-222ENST00000541204 GALNT16Q8N428 558 aa11.22□□□□□ -0.61
RNF4-222ENST00000541204 GPX8Q8TED1 209 aa11.22□□□□□ -0.61
RNF4-222ENST00000541204 ADAM19Q9H013 955 aa11.22□□□□□ -0.61
RNF4-222ENST00000541204 TRAV14DV4A0A0A6YYC5 116 aa11.22□□□□□ -0.61
RNF4-222ENST00000541204 ALG1L2C9J202 215 aa11.22□□□□□ -0.61
RNF4-222ENST00000541204 ATP6V1G2-DDX39BF2Z307 99 aa11.22□□□□□ -0.61
RNF4-222ENST00000541204 PHYHO14832 338 aa11.22□□□□□ -0.61
RNF4-222ENST00000541204 SCRG1O75711 98 aa11.22□□□□□ -0.61
RNF4-222ENST00000541204 RPA2P15927 270 aa11.22□□□□□ -0.61
RNF4-222ENST00000541204 DCAF7P61962 342 aa11.22□□□□□ -0.61
RNF4-222ENST00000541204 MFGE8Q08431 387 aaPredicted RBP11.22□□□□□ -0.61
RNF4-222ENST00000541204 MPPED2Q15777 294 aa11.22□□□□□ -0.61
RNF4-222ENST00000541204 NKAIN1Q4KMZ8 207 aa11.22□□□□□ -0.61
RNF4-222ENST00000541204 LY6G6FQ5SQ64 297 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 119.8 ms