RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 THOC7Q6I9Y2 204 aaKnown RBP15.1■□□□□ 0.01
USP28-208ENST00000540438 C11orf88Q6PI97 169 aa15.1■□□□□ 0.01
USP28-208ENST00000540438 GALNT16Q8N428 558 aa15.1■□□□□ 0.01
USP28-208ENST00000540438 ZNF441Q8N8Z8 693 aa15.1■□□□□ 0.01
USP28-208ENST00000540438 WDR77Q9BQA1 342 aaPredicted RBP15.1■□□□□ 0.01
USP28-208ENST00000540438 UCK1Q9HA47 277 aa15.1■□□□□ 0.01
USP28-208ENST00000540438 TMEM14AQ9Y6G1 99 aa15.1■□□□□ 0.01
USP28-208ENST00000540438 CACNA1HO95180 2353 aa15.1■□□□□ 0.01
USP28-208ENST00000540438 CCSO14618 274 aa15.1■□□□□ 0.01
USP28-208ENST00000540438 ARPC5O15511 151 aa15.1■□□□□ 0.01
USP28-208ENST00000540438 CSRP2Q16527 193 aa15.1■□□□□ 0.01
USP28-208ENST00000540438 OLFML2AQ68BL7 652 aa15.1■□□□□ 0.01
USP28-208ENST00000540438 LRRC18Q8N456 261 aa15.1■□□□□ 0.01
USP28-208ENST00000540438 ZNF680Q8NEM1 530 aa15.1■□□□□ 0.01
USP28-208ENST00000540438 OR52N5Q8NH56 324 aa15.1■□□□□ 0.01
USP28-208ENST00000540438 MVB12AQ96EY5 273 aa15.1■□□□□ 0.01
USP28-208ENST00000540438 ELMOD3Q96FG2 381 aa15.1■□□□□ 0.01
USP28-208ENST00000540438 OR2M2Q96R28 347 aa15.1■□□□□ 0.01
USP28-208ENST00000540438 VSX1Q9NZR4 365 aaPredicted RBP15.1■□□□□ 0.01
USP28-208ENST00000540438 ZNF230Q9UIE0 474 aaPredicted RBP15.1■□□□□ 0.01
USP28-208ENST00000540438 OR52A1Q9UKL2 312 aa15.1■□□□□ 0.01
USP28-208ENST00000540438 CEP250Q9BV73 2442 aa15.1■□□□□ 0.01
USP28-208ENST00000540438 SVILO95425 2214 aa15.1■□□□□ 0.01
USP28-208ENST00000540438 FXYD6-FXYD2A0A087WZ82 144 aa15.09■□□□□ 0.01
USP28-208ENST00000540438 ANKRD20A5PA0PJZ0 165 aa15.09■□□□□ 0.01
USP28-208ENST00000540438 FTCDNL1E5RQL4 147 aa15.09■□□□□ 0.01
USP28-208ENST00000540438 G3V3Q6 166 aa15.09■□□□□ 0.01
USP28-208ENST00000540438 MAPK3P27361 379 aaPredicted RBP15.09■□□□□ 0.01
USP28-208ENST00000540438 ANGPT1Q15389 498 aa15.09■□□□□ 0.01
USP28-208ENST00000540438 GRK1Q15835 563 aa15.09■□□□□ 0.01
USP28-208ENST00000540438 BEX5Q5H9J7 111 aa15.09■□□□□ 0.01
USP28-208ENST00000540438 RHBDD2Q6NTF9 364 aa15.09■□□□□ 0.01
USP28-208ENST00000540438 TMEM71Q6P5X7 295 aa15.09■□□□□ 0.01
USP28-208ENST00000540438 CFAP77Q6ZQR2 320 aa15.09■□□□□ 0.01
USP28-208ENST00000540438 OR52N4Q8NGI2 321 aa15.09■□□□□ 0.01
USP28-208ENST00000540438 OR51E1Q8TCB6 317 aa15.09■□□□□ 0.01
USP28-208ENST00000540438 NUDCD2Q8WVJ2 157 aa15.09■□□□□ 0.01
USP28-208ENST00000540438 LIPHQ8WWY8 451 aa15.09■□□□□ 0.01
USP28-208ENST00000540438 MCHR2Q969V1 340 aa15.09■□□□□ 0.01
USP28-208ENST00000540438 MNTQ99583 582 aa15.09■□□□□ 0.01
USP28-208ENST00000540438 FXYD6Q9H0Q3 95 aa15.09■□□□□ 0.01
USP28-208ENST00000540438 ASH2LQ9UBL3 628 aa15.09■□□□□ 0.01
USP28-208ENST00000540438 ZNF24P17028 368 aa15.09■□□□□ 0.01
USP28-208ENST00000540438 MNDAP41218 407 aa15.09■□□□□ 0.01
USP28-208ENST00000540438 DCDP81605 110 aaKnown RBP15.09■□□□□ 0.01
USP28-208ENST00000540438 LYSMD4Q5XG99 296 aa15.09■□□□□ 0.01
USP28-208ENST00000540438 H1FNTQ75WM6 255 aaPredicted RBP15.09■□□□□ 0.01
USP28-208ENST00000540438 KCTD20Q7Z5Y7 419 aa15.09■□□□□ 0.01
USP28-208ENST00000540438 RNF128Q8TEB7 428 aa15.09■□□□□ 0.01
USP28-208ENST00000540438 DEFB126Q9BYW3 111 aa15.09■□□□□ 0.01
USP28-208ENST00000540438 ZNF407Q9C0G0 2248 aa15.09■□□□□ 0.01
USP28-208ENST00000540438 VSTM2BA6NLU5 285 aa15.09■□□□□ 0.01
USP28-208ENST00000540438 ACOT7O00154 380 aa15.09■□□□□ 0.01
USP28-208ENST00000540438 GOSR2O14653 212 aa15.09■□□□□ 0.01
USP28-208ENST00000540438 ALX3O95076 343 aa15.09■□□□□ 0.01
USP28-208ENST00000540438 SULT1A3P0DMM9 295 aa15.09■□□□□ 0.01
USP28-208ENST00000540438 SULT1A4P0DMN0 295 aa15.09■□□□□ 0.01
USP28-208ENST00000540438 ZNF41P51814 821 aaPredicted RBP15.09■□□□□ 0.01
USP28-208ENST00000540438 EPHA4P54764 986 aa15.09■□□□□ 0.01
USP28-208ENST00000540438 DCAF7P61962 342 aa15.09■□□□□ 0.01
USP28-208ENST00000540438 EGR3Q06889 387 aa15.09■□□□□ 0.01
USP28-208ENST00000540438 RASGEF1BQ0VAM2 473 aa15.09■□□□□ 0.01
USP28-208ENST00000540438 COL19A1Q14993 1142 aa15.09■□□□□ 0.01
USP28-208ENST00000540438 ISXQ2M1V0 245 aa15.09■□□□□ 0.01
USP28-208ENST00000540438 WDR45BQ5MNZ6 344 aa15.09■□□□□ 0.01
USP28-208ENST00000540438 TCEAL6Q6IPX3 200 aa15.09■□□□□ 0.01
USP28-208ENST00000540438 NFAM1Q8NET5 270 aaPredicted RBP15.09■□□□□ 0.01
USP28-208ENST00000540438 TCEAL3Q969E4 200 aa15.09■□□□□ 0.01
USP28-208ENST00000540438 ADAT3Q96EY9 351 aaPredicted RBP15.09■□□□□ 0.01
USP28-208ENST00000540438 LRFN5Q96NI6 719 aa15.09■□□□□ 0.01
USP28-208ENST00000540438 GON7Q9BXV9 100 aa15.09■□□□□ 0.01
USP28-208ENST00000540438 ZNF768Q9H5H4 540 aaKnown RBP15.09■□□□□ 0.01
USP28-208ENST00000540438 SERINC1Q9NRX5 453 aa15.09■□□□□ 0.01
USP28-208ENST00000540438 TRBV5-7A0A0A0MS05 114 aa15.08■□□□□ 0
USP28-208ENST00000540438 SPINK2P20155 84 aa15.08■□□□□ 0
USP28-208ENST00000540438 HTR2CP28335 458 aa15.08■□□□□ 0
USP28-208ENST00000540438 CD276Q5ZPR3 534 aa15.08■□□□□ 0
USP28-208ENST00000540438 TIGD3Q6B0B8 471 aa15.08■□□□□ 0
USP28-208ENST00000540438 KCTD18Q6PI47 426 aaPredicted RBP15.08■□□□□ 0
USP28-208ENST00000540438 BATF2Q8N1L9 274 aa15.08■□□□□ 0
USP28-208ENST00000540438 OR10H5Q8NGA6 315 aa15.08■□□□□ 0
USP28-208ENST00000540438 SEC22AQ96IW7 307 aa15.08■□□□□ 0
USP28-208ENST00000540438 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP15.08■□□□□ 0
USP28-208ENST00000540438 BANF2Q9H503 90 aa15.08■□□□□ 0
USP28-208ENST00000540438 EXO5Q9H790 373 aa15.08■□□□□ 0
USP28-208ENST00000540438 ZNF35P13682 527 aa15.08■□□□□ 0
USP28-208ENST00000540438 ZNF250P15622 560 aa15.08■□□□□ 0
USP28-208ENST00000540438 NUDT1P36639 197 aa15.08■□□□□ 0
USP28-208ENST00000540438 PER3P56645 1201 aa15.08■□□□□ 0
USP28-208ENST00000540438 GPR85P60893 370 aa15.08■□□□□ 0
USP28-208ENST00000540438 C17orf67Q0P5P2 114 aa15.08■□□□□ 0
USP28-208ENST00000540438 EXOSC2Q13868 293 aaKnown RBP15.08■□□□□ 0
USP28-208ENST00000540438 EMC4Q5J8M3 183 aa15.08■□□□□ 0
USP28-208ENST00000540438 MR1Q95460 341 aa15.08■□□□□ 0
USP28-208ENST00000540438 SPSB2Q99619 263 aa15.08■□□□□ 0
USP28-208ENST00000540438 PRR13Q9NZ81 148 aa15.08■□□□□ 0
USP28-208ENST00000540438 ZNF319Q9P2F9 582 aa15.08■□□□□ 0
USP28-208ENST00000540438 MYOTQ9UBF9 498 aa15.08■□□□□ 0
USP28-208ENST00000540438 SPENQ96T58 3664 aaKnown RBP15.08■□□□□ 0
USP28-208ENST00000540438 LY6G6EA0A0G2JKS1 128 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms