RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 PCSK6P29122 969 aa12.97□□□□□ -0.33
CPSF1-208ENST00000532560 GLRXP35754 106 aa12.97□□□□□ -0.33
CPSF1-208ENST00000532560 RPL5P46777 297 aaKnown RBP12.97□□□□□ -0.33
CPSF1-208ENST00000532560 SCRN3Q0VDG4 424 aa12.97□□□□□ -0.33
CPSF1-208ENST00000532560 AQP6Q13520 282 aa12.97□□□□□ -0.33
CPSF1-208ENST00000532560 ATP6AP1Q15904 470 aa12.97□□□□□ -0.33
CPSF1-208ENST00000532560 KCNMB1Q16558 191 aa12.97□□□□□ -0.33
CPSF1-208ENST00000532560 SLC36A3Q495N2 470 aa12.97□□□□□ -0.33
CPSF1-208ENST00000532560 SLC35F1Q5T1Q4 408 aa12.97□□□□□ -0.33
CPSF1-208ENST00000532560 SHQ1Q6PI26 577 aaKnown RBP12.97□□□□□ -0.33
CPSF1-208ENST00000532560 HS3ST5Q8IZT8 346 aa12.97□□□□□ -0.33
CPSF1-208ENST00000532560 OR6V1Q8N148 313 aa12.97□□□□□ -0.33
CPSF1-208ENST00000532560 OR52E2Q8NGJ4 325 aa12.97□□□□□ -0.33
CPSF1-208ENST00000532560 AKR7LQ8NHP1 331 aa12.97□□□□□ -0.33
CPSF1-208ENST00000532560 TEX47Q8TBZ9 253 aa12.97□□□□□ -0.33
CPSF1-208ENST00000532560 NRBF2Q96F24 287 aa12.97□□□□□ -0.33
CPSF1-208ENST00000532560 POM121L2Q96KW2 1035 aa12.97□□□□□ -0.33
CPSF1-208ENST00000532560 Q96MF0 132 aa12.97□□□□□ -0.33
CPSF1-208ENST00000532560 FOXN4Q96NZ1 517 aa12.97□□□□□ -0.33
CPSF1-208ENST00000532560 PLK3Q9H4B4 646 aa12.97□□□□□ -0.33
CPSF1-208ENST00000532560 NTN4Q9HB63 628 aa12.97□□□□□ -0.33
CPSF1-208ENST00000532560 VCX3AQ9NNX9 186 aa12.97□□□□□ -0.33
CPSF1-208ENST00000532560 RPRD1BQ9NQG5 326 aaKnown RBP12.97□□□□□ -0.33
CPSF1-208ENST00000532560 REV1Q9UBZ9 1251 aa12.97□□□□□ -0.33
CPSF1-208ENST00000532560 B9D1Q9UPM9 204 aa12.97□□□□□ -0.33
CPSF1-208ENST00000532560 CMAHPQ9Y471 501 aa12.97□□□□□ -0.33
CPSF1-208ENST00000532560 COMMD3-BMI1R4GMX3 469 aa12.97□□□□□ -0.33
CPSF1-208ENST00000532560 PMF1-BGLAPU3KQ54 211 aa12.97□□□□□ -0.33
CPSF1-208ENST00000532560 ARFGEF3Q5TH69 2177 aa12.97□□□□□ -0.33
CPSF1-208ENST00000532560 COX5BP10606 129 aa12.96□□□□□ -0.33
CPSF1-208ENST00000532560 CCL2P13500 99 aa12.96□□□□□ -0.33
CPSF1-208ENST00000532560 PPOXP50336 477 aa12.96□□□□□ -0.33
CPSF1-208ENST00000532560 ARHGDIAP52565 204 aa12.96□□□□□ -0.33
CPSF1-208ENST00000532560 GLO1Q04760 184 aa12.96□□□□□ -0.33
CPSF1-208ENST00000532560 SLC26A10Q8NG04 563 aa12.96□□□□□ -0.33
CPSF1-208ENST00000532560 OR4Q3Q8NH05 313 aa12.96□□□□□ -0.33
CPSF1-208ENST00000532560 C11orf40Q8WZ69 217 aa12.96□□□□□ -0.33
CPSF1-208ENST00000532560 MRPL24Q96A35 216 aaKnown RBP12.96□□□□□ -0.33
CPSF1-208ENST00000532560 DDOQ99489 341 aa12.96□□□□□ -0.33
CPSF1-208ENST00000532560 FN3KQ9H479 309 aa12.96□□□□□ -0.33
CPSF1-208ENST00000532560 ZNF556Q9HAH1 456 aa12.96□□□□□ -0.33
CPSF1-208ENST00000532560 DLL4Q9NR61 685 aa12.96□□□□□ -0.33
CPSF1-208ENST00000532560 KLHL21Q9UJP4 597 aa12.96□□□□□ -0.33
CPSF1-208ENST00000532560 GDF2Q9UK05 429 aaPredicted RBP12.96□□□□□ -0.33
CPSF1-208ENST00000532560 LOC100509620A0A075B734 347 aa12.95□□□□□ -0.34
CPSF1-208ENST00000532560 H3BN98 237 aa12.95□□□□□ -0.34
CPSF1-208ENST00000532560 ICMTO60725 284 aa12.95□□□□□ -0.34
CPSF1-208ENST00000532560 NDUFS7O75251 213 aa12.95□□□□□ -0.34
CPSF1-208ENST00000532560 MPZL1O95297 269 aa12.95□□□□□ -0.34
CPSF1-208ENST00000532560 CD99P14209 185 aa12.95□□□□□ -0.34
CPSF1-208ENST00000532560 EVX1P49640 407 aa12.95□□□□□ -0.34
CPSF1-208ENST00000532560 GDI2P50395 445 aaKnown RBP12.95□□□□□ -0.34
CPSF1-208ENST00000532560 DYNC1I2Q13409 638 aaKnown RBP12.95□□□□□ -0.34
CPSF1-208ENST00000532560 MSMPQ1L6U9 139 aa12.95□□□□□ -0.34
CPSF1-208ENST00000532560 ZNF362Q5T0B9 420 aaPredicted RBP12.95□□□□□ -0.34
CPSF1-208ENST00000532560 ZNF774Q6NX45 483 aa12.95□□□□□ -0.34
CPSF1-208ENST00000532560 SVOPLQ8N434 492 aa12.95□□□□□ -0.34
CPSF1-208ENST00000532560 CYB561A3Q8NBI2 242 aa12.95□□□□□ -0.34
CPSF1-208ENST00000532560 SLC37A3Q8NCC5 494 aa12.95□□□□□ -0.34
CPSF1-208ENST00000532560 C9orf16Q9BUW7 83 aa12.95□□□□□ -0.34
CPSF1-208ENST00000532560 RBM4Q9BWF3 364 aaKnown RBP12.95□□□□□ -0.34
CPSF1-208ENST00000532560 BCL2L14Q9BZR8 327 aa12.95□□□□□ -0.34
CPSF1-208ENST00000532560 SRA1Q9HD15 236 aaKnown RBP12.95□□□□□ -0.34
CPSF1-208ENST00000532560 PAPOLBQ9NRJ5 636 aaKnown RBP12.95□□□□□ -0.34
CPSF1-208ENST00000532560 ASH2LQ9UBL3 628 aa12.95□□□□□ -0.34
CPSF1-208ENST00000532560 NDRG4Q9ULP0 352 aaKnown RBP12.95□□□□□ -0.34
CPSF1-208ENST00000532560 POLR1DQ9Y2S0 133 aa12.95□□□□□ -0.34
CPSF1-208ENST00000532560 MED13LQ71F56 2210 aa12.94□□□□□ -0.34
CPSF1-208ENST00000532560 TMEM129A0AVI4 362 aa12.94□□□□□ -0.34
CPSF1-208ENST00000532560 C5orf49A4QMS7 147 aa12.94□□□□□ -0.34
CPSF1-208ENST00000532560 RIIAD1A6NNX1 92 aa12.94□□□□□ -0.34
CPSF1-208ENST00000532560 SGCEO43556 437 aa12.94□□□□□ -0.34
CPSF1-208ENST00000532560 DOK2O60496 412 aa12.94□□□□□ -0.34
CPSF1-208ENST00000532560 GPANK1O95872 356 aa12.94□□□□□ -0.34
CPSF1-208ENST00000532560 CLPTM1O96005 669 aa12.94□□□□□ -0.34
CPSF1-208ENST00000532560 IFNGP01579 166 aa12.94□□□□□ -0.34
CPSF1-208ENST00000532560 FAM157BP0CG42 384 aa12.94□□□□□ -0.34
CPSF1-208ENST00000532560 OSMP13725 252 aa12.94□□□□□ -0.34
CPSF1-208ENST00000532560 PRKACGP22612 351 aa12.94□□□□□ -0.34
CPSF1-208ENST00000532560 FASP25445 335 aa12.94□□□□□ -0.34
CPSF1-208ENST00000532560 GRK5P34947 590 aa12.94□□□□□ -0.34
CPSF1-208ENST00000532560 RAD52P43351 418 aa12.94□□□□□ -0.34
CPSF1-208ENST00000532560 CENPAP49450 140 aa12.94□□□□□ -0.34
CPSF1-208ENST00000532560 SLC25A1P53007 311 aa12.94□□□□□ -0.34
CPSF1-208ENST00000532560 NUDT6P53370 316 aa12.94□□□□□ -0.34
CPSF1-208ENST00000532560 UCP2P55851 309 aa12.94□□□□□ -0.34
CPSF1-208ENST00000532560 RAB35Q15286 201 aa12.94□□□□□ -0.34
CPSF1-208ENST00000532560 MEP1BQ16820 701 aa12.94□□□□□ -0.34
CPSF1-208ENST00000532560 RGS7BPQ6MZT1 257 aaPredicted RBP12.94□□□□□ -0.34
CPSF1-208ENST00000532560 FAHD1Q6P587 224 aa12.94□□□□□ -0.34
CPSF1-208ENST00000532560 DNM1P46Q6ZS02 220 aa12.94□□□□□ -0.34
CPSF1-208ENST00000532560 VASH1Q7L8A9 365 aaPredicted RBP12.94□□□□□ -0.34
CPSF1-208ENST00000532560 ATG16L2Q8NAA4 619 aa12.94□□□□□ -0.34
CPSF1-208ENST00000532560 OR2T4Q8NH00 348 aa12.94□□□□□ -0.34
CPSF1-208ENST00000532560 OR5K1Q8NHB7 308 aa12.94□□□□□ -0.34
CPSF1-208ENST00000532560 DOK1Q99704 481 aa12.94□□□□□ -0.34
CPSF1-208ENST00000532560 BDH2Q9BUT1 245 aa12.94□□□□□ -0.34
CPSF1-208ENST00000532560 MRPL37Q9BZE1 423 aaKnown RBP12.94□□□□□ -0.34
CPSF1-208ENST00000532560 CMC2Q9NRP2 79 aa12.94□□□□□ -0.34
CPSF1-208ENST00000532560 PLEK2Q9NYT0 353 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms