RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 CKLFQ9UBR5 152 aa17.29■□□□□ 0.36
VPS28-213ENST00000530983 CGGBP1Q9UFW8 167 aaPredicted RBP17.29■□□□□ 0.36
VPS28-213ENST00000530983 PFDN2Q9UHV9 154 aa17.29■□□□□ 0.36
VPS28-213ENST00000530983 MPZL1O95297 269 aa17.29■□□□□ 0.36
VPS28-213ENST00000530983 CD2P06729 351 aa17.29■□□□□ 0.36
VPS28-213ENST00000530983 CD37P11049 281 aa17.29■□□□□ 0.36
VPS28-213ENST00000530983 POLR2HP52434 150 aaKnown RBP17.29■□□□□ 0.36
VPS28-213ENST00000530983 GK2Q14410 553 aaPredicted RBP17.29■□□□□ 0.36
VPS28-213ENST00000530983 ZNF627Q7L945 461 aa17.29■□□□□ 0.36
VPS28-213ENST00000530983 BVESQ8NE79 360 aa17.29■□□□□ 0.36
VPS28-213ENST00000530983 STK35Q8TDR2 534 aa17.29■□□□□ 0.36
VPS28-213ENST00000530983 SLC25A44Q96H78 314 aaPredicted RBP17.29■□□□□ 0.36
VPS28-213ENST00000530983 OR11A1Q9GZK7 315 aa17.29■□□□□ 0.36
VPS28-213ENST00000530983 WWTR1Q9GZV5 400 aa17.29■□□□□ 0.36
VPS28-213ENST00000530983 CHRNA10Q9GZZ6 450 aa17.29■□□□□ 0.36
VPS28-213ENST00000530983 FBXL2Q9UKC9 423 aa17.29■□□□□ 0.36
VPS28-213ENST00000530983 PCP4L1A6NKN8 68 aa17.28■□□□□ 0.36
VPS28-213ENST00000530983 SULT1C2O00338 296 aa17.28■□□□□ 0.36
VPS28-213ENST00000530983 PLPP3O14495 311 aa17.28■□□□□ 0.36
VPS28-213ENST00000530983 TO15178 435 aa17.28■□□□□ 0.36
VPS28-213ENST00000530983 SRSF10O75494 262 aaKnown RBP17.28■□□□□ 0.36
VPS28-213ENST00000530983 RAB3DO95716 219 aa17.28■□□□□ 0.36
VPS28-213ENST00000530983 OR4E1P0C645 316 aa17.28■□□□□ 0.36
VPS28-213ENST00000530983 NME1P15531 152 aaKnown RBP17.28■□□□□ 0.36
VPS28-213ENST00000530983 ABCD3P28288 659 aa17.28■□□□□ 0.36
VPS28-213ENST00000530983 SORDQ00796 357 aa17.28■□□□□ 0.36
VPS28-213ENST00000530983 HLA-DQA1Q5Y7H0 255 aa17.28■□□□□ 0.36
VPS28-213ENST00000530983 TMEM229BQ8NBD8 167 aa17.28■□□□□ 0.36
VPS28-213ENST00000530983 OR52N5Q8NH56 324 aa17.28■□□□□ 0.36
VPS28-213ENST00000530983 TINAGL1Q9GZM7 467 aaPredicted RBP17.28■□□□□ 0.36
VPS28-213ENST00000530983 A8MVM7 634 aa17.27■□□□□ 0.36
VPS28-213ENST00000530983 M0QYG6 137 aa17.27■□□□□ 0.36
VPS28-213ENST00000530983 MTRF1O75570 445 aaKnown RBP17.27■□□□□ 0.36
VPS28-213ENST00000530983 IGHMP01871 453 aa17.27■□□□□ 0.36
VPS28-213ENST00000530983 LTBRP36941 435 aa17.27■□□□□ 0.36
VPS28-213ENST00000530983 GMFBP60983 142 aa17.27■□□□□ 0.36
VPS28-213ENST00000530983 LY6G6FQ5SQ64 297 aa17.27■□□□□ 0.36
VPS28-213ENST00000530983 ZNF660Q6AZW8 331 aaPredicted RBP17.27■□□□□ 0.36
VPS28-213ENST00000530983 ATRAIDQ6UW56 229 aa17.27■□□□□ 0.36
VPS28-213ENST00000530983 GKN2Q86XP6 184 aa17.27■□□□□ 0.36
VPS28-213ENST00000530983 ZNF587Q96SQ5 575 aaPredicted RBP17.27■□□□□ 0.36
VPS28-213ENST00000530983 POTEKPQ9BYX7 375 aa17.27■□□□□ 0.36
VPS28-213ENST00000530983 COA3Q9Y2R0 106 aaPredicted RBP17.27■□□□□ 0.36
VPS28-213ENST00000530983 TMEM82A0PJX8 343 aa17.27■□□□□ 0.35
VPS28-213ENST00000530983 DCDC2BA2VCK2 349 aa17.27■□□□□ 0.35
VPS28-213ENST00000530983 DOK2O60496 412 aa17.27■□□□□ 0.35
VPS28-213ENST00000530983 PMS2P2O95744 297 aa17.27■□□□□ 0.35
VPS28-213ENST00000530983 HLA-DOBP13765 273 aa17.27■□□□□ 0.35
VPS28-213ENST00000530983 RPA2P15927 270 aa17.27■□□□□ 0.35
VPS28-213ENST00000530983 GLO1Q04760 184 aa17.27■□□□□ 0.35
VPS28-213ENST00000530983 VWA2Q5GFL6 755 aa17.27■□□□□ 0.35
VPS28-213ENST00000530983 GPR119Q8TDV5 335 aa17.27■□□□□ 0.35
VPS28-213ENST00000530983 TTYH1Q9H313 450 aaPredicted RBP17.27■□□□□ 0.35
VPS28-213ENST00000530983 EMC9Q9Y3B6 208 aa17.27■□□□□ 0.35
VPS28-213ENST00000530983 LDLRAD4O15165 306 aa17.26■□□□□ 0.35
VPS28-213ENST00000530983 ALOX12BO75342 701 aa17.26■□□□□ 0.35
VPS28-213ENST00000530983 UBXN2BQ14CS0 331 aa17.26■□□□□ 0.35
VPS28-213ENST00000530983 NR0B2Q15466 257 aa17.26■□□□□ 0.35
VPS28-213ENST00000530983 MOGAT2Q3SYC2 334 aa17.26■□□□□ 0.35
VPS28-213ENST00000530983 ADGRE4PQ86SQ3 457 aa17.26■□□□□ 0.35
VPS28-213ENST00000530983 C17orf82Q86X59 251 aaPredicted RBP17.26■□□□□ 0.35
VPS28-213ENST00000530983 DEFB119Q8N690 84 aa17.26■□□□□ 0.35
VPS28-213ENST00000530983 ASB13Q8WXK3 278 aa17.26■□□□□ 0.35
VPS28-213ENST00000530983 MFFQ9GZY8 342 aa17.26■□□□□ 0.35
VPS28-213ENST00000530983 ZMAT3Q9HA38 289 aaKnown RBP17.26■□□□□ 0.35
VPS28-213ENST00000530983 UPB1Q9UBR1 384 aa17.26■□□□□ 0.35
VPS28-213ENST00000530983 FER1L5A0AVI2 2057 aa17.26■□□□□ 0.35
VPS28-213ENST00000530983 TRAV14DV4A0A0A6YYC5 116 aa17.26■□□□□ 0.35
VPS28-213ENST00000530983 WDPCPO95876 746 aa17.26■□□□□ 0.35
VPS28-213ENST00000530983 MPGP29372 298 aa17.26■□□□□ 0.35
VPS28-213ENST00000530983 PNLIPRP2P54317 469 aa17.26■□□□□ 0.35
VPS28-213ENST00000530983 NSDHLQ15738 373 aa17.26■□□□□ 0.35
VPS28-213ENST00000530983 DEFB133Q30KQ1 61 aa17.26■□□□□ 0.35
VPS28-213ENST00000530983 TMED4Q7Z7H5 227 aa17.26■□□□□ 0.35
VPS28-213ENST00000530983 PRSS58Q8IYP2 241 aa17.26■□□□□ 0.35
VPS28-213ENST00000530983 LINC00518Q8N0U6 118 aa17.26■□□□□ 0.35
VPS28-213ENST00000530983 KDM8Q8N371 416 aa17.26■□□□□ 0.35
VPS28-213ENST00000530983 ZNF454Q8N9F8 522 aa17.26■□□□□ 0.35
VPS28-213ENST00000530983 CCDC107Q8WV48 283 aa17.26■□□□□ 0.35
VPS28-213ENST00000530983 SLC25A21Q9BQT8 299 aaPredicted RBP17.26■□□□□ 0.35
VPS28-213ENST00000530983 SCPEP1Q9HB40 452 aa17.26■□□□□ 0.35
VPS28-213ENST00000530983 MYEF2Q9P2K5 600 aaKnown RBP17.26■□□□□ 0.35
VPS28-213ENST00000530983 GPR160Q9UJ42 338 aa17.26■□□□□ 0.35
VPS28-213ENST00000530983 R4GMQ9 66 aa17.26■□□□□ 0.35
VPS28-213ENST00000530983 PRUNE2Q8WUY3 3088 aa17.26■□□□□ 0.35
VPS28-213ENST00000530983 RFPL4AA6NLU0 287 aa17.25■□□□□ 0.35
VPS28-213ENST00000530983 RFPL4AL1F8VTS6 287 aa17.25■□□□□ 0.35
VPS28-213ENST00000530983 FADS1O60427 444 aa17.25■□□□□ 0.35
VPS28-213ENST00000530983 AQP8O94778 261 aa17.25■□□□□ 0.35
VPS28-213ENST00000530983 AMY2AP04746 511 aa17.25■□□□□ 0.35
VPS28-213ENST00000530983 ZNF735P0CB33 412 aa17.25■□□□□ 0.35
VPS28-213ENST00000530983 IL11P20809 199 aa17.25■□□□□ 0.35
VPS28-213ENST00000530983 SPOCK1Q08629 439 aa17.25■□□□□ 0.35
VPS28-213ENST00000530983 OR10K2Q6IF99 312 aa17.25■□□□□ 0.35
VPS28-213ENST00000530983 GRINAQ7Z429 371 aa17.25■□□□□ 0.35
VPS28-213ENST00000530983 CDH26Q8IXH8 852 aa17.25■□□□□ 0.35
VPS28-213ENST00000530983 C12orf45Q8N5I9 185 aaPredicted RBP17.25■□□□□ 0.35
VPS28-213ENST00000530983 OR13C3Q8NGS6 347 aa17.25■□□□□ 0.35
VPS28-213ENST00000530983 OR6K3Q8NGY3 331 aa17.25■□□□□ 0.35
VPS28-213ENST00000530983 OR1S1Q8NH92 325 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms