RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 PPP1R3DO95685 299 aa17.65■□□□□ 0.42
VPS28-206ENST00000526734 CLPTM1O96005 669 aa17.65■□□□□ 0.42
VPS28-206ENST00000526734 T-ENOLP0DO92 83 aa17.65■□□□□ 0.42
VPS28-206ENST00000526734 WNT5AP41221 380 aa17.65■□□□□ 0.42
VPS28-206ENST00000526734 ERVS71-1P61550 626 aa17.65■□□□□ 0.42
VPS28-206ENST00000526734 FAM209AQ5JX71 171 aa17.65■□□□□ 0.42
VPS28-206ENST00000526734 MBNL2Q5VZF2 373 aaKnown RBP17.65■□□□□ 0.42
VPS28-206ENST00000526734 PGBD2Q6P3X8 592 aa17.65■□□□□ 0.42
VPS28-206ENST00000526734 ZNF620Q6ZNG0 422 aa17.65■□□□□ 0.42
VPS28-206ENST00000526734 RINLQ6ZS11 566 aa17.65■□□□□ 0.42
VPS28-206ENST00000526734 PTCHD4Q6ZW05 846 aa17.65■□□□□ 0.42
VPS28-206ENST00000526734 HIPK1Q86Z02 1210 aa17.65■□□□□ 0.42
VPS28-206ENST00000526734 ZNF101Q8IZC7 436 aa17.65■□□□□ 0.42
VPS28-206ENST00000526734 OR52L1Q8NGH7 329 aa17.65■□□□□ 0.42
VPS28-206ENST00000526734 IPCEF1Q8WWN9 437 aaPredicted RBP17.65■□□□□ 0.42
VPS28-206ENST00000526734 COG8Q96MW5 612 aa17.65■□□□□ 0.42
VPS28-206ENST00000526734 IFT27Q9BW83 186 aa17.65■□□□□ 0.42
VPS28-206ENST00000526734 NUAK2Q9H093 628 aa17.65■□□□□ 0.42
VPS28-206ENST00000526734 RACGAP1Q9H0H5 632 aa17.65■□□□□ 0.42
VPS28-206ENST00000526734 CYSLTR2Q9NS75 346 aa17.65■□□□□ 0.42
VPS28-206ENST00000526734 COA3Q9Y2R0 106 aaPredicted RBP17.65■□□□□ 0.42
VPS28-206ENST00000526734 J3QW42 95 aa17.64■□□□□ 0.41
VPS28-206ENST00000526734 NOS3P29474 1203 aa17.64■□□□□ 0.41
VPS28-206ENST00000526734 LIPAP38571 399 aa17.64■□□□□ 0.41
VPS28-206ENST00000526734 CDKN2AP42771 156 aaKnown RBP17.64■□□□□ 0.41
VPS28-206ENST00000526734 HTR5AP47898 357 aa17.64■□□□□ 0.41
VPS28-206ENST00000526734 PPP1CBP62140 327 aa17.64■□□□□ 0.41
VPS28-206ENST00000526734 TEKQ02763 1124 aa17.64■□□□□ 0.41
VPS28-206ENST00000526734 ZMAT1Q5H9K5 638 aa17.64■□□□□ 0.41
VPS28-206ENST00000526734 ELFN2Q5R3F8 820 aa17.64■□□□□ 0.41
VPS28-206ENST00000526734 ABHD4Q8TB40 342 aa17.64■□□□□ 0.41
VPS28-206ENST00000526734 MARS2Q96GW9 593 aaKnown RBP17.64■□□□□ 0.41
VPS28-206ENST00000526734 C4orf45Q96LM5 186 aa17.64■□□□□ 0.41
VPS28-206ENST00000526734 LRGUKQ96M69 825 aa17.64■□□□□ 0.41
VPS28-206ENST00000526734 RERGLQ9H628 205 aa17.64■□□□□ 0.41
VPS28-206ENST00000526734 TBCCD1Q9NVR7 557 aa17.64■□□□□ 0.41
VPS28-206ENST00000526734 TAS2R1Q9NYW7 299 aa17.64■□□□□ 0.41
VPS28-206ENST00000526734 LPAR3Q9UBY5 353 aa17.64■□□□□ 0.41
VPS28-206ENST00000526734 CDC42EP3Q9UKI2 254 aa17.64■□□□□ 0.41
VPS28-206ENST00000526734 POLR1DQ9Y2S0 133 aa17.64■□□□□ 0.41
VPS28-206ENST00000526734 CDH10Q9Y6N8 788 aa17.64■□□□□ 0.41
VPS28-206ENST00000526734 CCNB2O95067 398 aa17.63■□□□□ 0.41
VPS28-206ENST00000526734 ABHD16AO95870 558 aa17.63■□□□□ 0.41
VPS28-206ENST00000526734 SCG5P05408 212 aa17.63■□□□□ 0.41
VPS28-206ENST00000526734 NAT2P11245 290 aa17.63■□□□□ 0.41
VPS28-206ENST00000526734 TMEM33P57088 247 aa17.63■□□□□ 0.41
VPS28-206ENST00000526734 GLO1Q04760 184 aa17.63■□□□□ 0.41
VPS28-206ENST00000526734 FAM166AQ6J272 317 aa17.63■□□□□ 0.41
VPS28-206ENST00000526734 RFPL4BQ6ZWI9 263 aa17.63■□□□□ 0.41
VPS28-206ENST00000526734 TRPM8Q7Z2W7 1104 aa17.63■□□□□ 0.41
VPS28-206ENST00000526734 SAMD8Q96LT4 415 aa17.63■□□□□ 0.41
VPS28-206ENST00000526734 DCLRE1CQ96SD1 692 aaKnown RBP17.63■□□□□ 0.41
VPS28-206ENST00000526734 PLEK2Q9NYT0 353 aa17.63■□□□□ 0.41
VPS28-206ENST00000526734 ASH2LQ9UBL3 628 aa17.63■□□□□ 0.41
VPS28-206ENST00000526734 IGLV1-36A0A0B4J1U3 117 aa17.62■□□□□ 0.41
VPS28-206ENST00000526734 PLSCR5A0PG75 271 aa17.62■□□□□ 0.41
VPS28-206ENST00000526734 HPXP02790 462 aa17.62■□□□□ 0.41
VPS28-206ENST00000526734 ZNF16P17020 682 aaPredicted RBP17.62■□□□□ 0.41
VPS28-206ENST00000526734 GSTM3P21266 225 aa17.62■□□□□ 0.41
VPS28-206ENST00000526734 GPR6P46095 362 aaPredicted RBP17.62■□□□□ 0.41
VPS28-206ENST00000526734 RGS6P49758 472 aa17.62■□□□□ 0.41
VPS28-206ENST00000526734 TRAP1Q12931 704 aaKnown RBP17.62■□□□□ 0.41
VPS28-206ENST00000526734 CHRFAM7AQ494W8 412 aa17.62■□□□□ 0.41
VPS28-206ENST00000526734 SLC36A3Q495N2 470 aa17.62■□□□□ 0.41
VPS28-206ENST00000526734 DNAL1Q4LDG9 190 aa17.62■□□□□ 0.41
VPS28-206ENST00000526734 OR2T5Q6IEZ7 315 aa17.62■□□□□ 0.41
VPS28-206ENST00000526734 LEG1Q6P5S2 330 aa17.62■□□□□ 0.41
VPS28-206ENST00000526734 VASH1Q7L8A9 365 aaPredicted RBP17.62■□□□□ 0.41
VPS28-206ENST00000526734 OR4C15Q8NGM1 316 aa17.62■□□□□ 0.41
VPS28-206ENST00000526734 OR2T29Q8NH02 315 aa17.62■□□□□ 0.41
VPS28-206ENST00000526734 SLC25A40Q8TBP6 338 aa17.62■□□□□ 0.41
VPS28-206ENST00000526734 KLF14Q8TD94 323 aaPredicted RBP17.62■□□□□ 0.41
VPS28-206ENST00000526734 BCAS4Q8TDM0 211 aa17.62■□□□□ 0.41
VPS28-206ENST00000526734 DIRC2Q96SL1 478 aa17.62■□□□□ 0.41
VPS28-206ENST00000526734 HDHD2Q9H0R4 259 aa17.62■□□□□ 0.41
VPS28-206ENST00000526734 REEP1Q9H902 201 aa17.62■□□□□ 0.41
VPS28-206ENST00000526734 KCNS2Q9ULS6 477 aa17.62■□□□□ 0.41
VPS28-206ENST00000526734 LILRA1O75019 489 aa17.61■□□□□ 0.41
VPS28-206ENST00000526734 ADH4P08319 380 aa17.61■□□□□ 0.41
VPS28-206ENST00000526734 RAP2AP10114 183 aa17.61■□□□□ 0.41
VPS28-206ENST00000526734 GAAP10253 952 aa17.61■□□□□ 0.41
VPS28-206ENST00000526734 HIST1H1CP16403 213 aaKnown RBP17.61■□□□□ 0.41
VPS28-206ENST00000526734 ZNF81P51508 661 aa17.61■□□□□ 0.41
VPS28-206ENST00000526734 MS4A2Q01362 244 aa17.61■□□□□ 0.41
VPS28-206ENST00000526734 ZNF770Q6IQ21 691 aaPredicted RBP17.61■□□□□ 0.41
VPS28-206ENST00000526734 RASSF6Q6ZTQ3 369 aa17.61■□□□□ 0.41
VPS28-206ENST00000526734 ZBTB46Q86UZ6 589 aa17.61■□□□□ 0.41
VPS28-206ENST00000526734 GJC3Q8NFK1 279 aa17.61■□□□□ 0.41
VPS28-206ENST00000526734 NMNAT3Q96T66 252 aa17.61■□□□□ 0.41
VPS28-206ENST00000526734 OR2J1Q9GZK6 312 aa17.61■□□□□ 0.41
VPS28-206ENST00000526734 IL20Q9NYY1 176 aa17.61■□□□□ 0.41
VPS28-206ENST00000526734 B9D1Q9UPM9 204 aa17.61■□□□□ 0.41
VPS28-206ENST00000526734 RTTNQ86VV8 2226 aa17.61■□□□□ 0.41
VPS28-206ENST00000526734 SONP18583 2426 aaKnown RBP17.6■□□□□ 0.41
VPS28-206ENST00000526734 LOC100289279A0A1B0GTE1 492 aa17.6■□□□□ 0.41
VPS28-206ENST00000526734 OR6C6A6NF89 314 aa17.6■□□□□ 0.41
VPS28-206ENST00000526734 AQP12BA6NM10 295 aa17.6■□□□□ 0.41
VPS28-206ENST00000526734 LMX1BO60663 402 aa17.6■□□□□ 0.41
VPS28-206ENST00000526734 NCR1O76036 304 aa17.6■□□□□ 0.41
VPS28-206ENST00000526734 ALKBH6Q3KRA9 238 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms