RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 TMEM178AQ8NBL3 297 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 GPR150Q8NGU9 434 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 PPP1R35Q8TAP8 253 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 GPX8Q8TED1 209 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 DTD2Q96FN9 168 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 DMRT3Q9NQL9 472 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 TREX1Q9NSU2 369 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 CORINQ9Y5Q5 1042 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 NPIPB15A6NHN6 443 aaPredicted RBP8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 GABARAPH6UMI1 98 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 BCL2L11O43521 198 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 NUDT21O43809 227 aaKnown RBP8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 AQP8O94778 261 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 AKR7A3O95154 331 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 CRHP06850 196 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 SCGB1A1P11684 91 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 ACHEP22303 614 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 SUCLG1P53597 346 aaKnown RBP8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 CLDN10P78369 228 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 ZNF92Q03936 586 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 MPPED2Q15777 294 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 FOXB2Q5VYV0 432 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 ZNF429Q86V71 674 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 CIB3Q96Q77 187 aaPredicted RBP8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 PLEKHA2Q9HB19 425 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 ARFGEF1Q9Y6D6 1849 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 H3BML4 177 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 ZNF888P0CJ79 500 aaPredicted RBP8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 SRMP19623 302 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 CD70P32970 193 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 ACKR1Q16570 336 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 SOWAHCQ53LP3 525 aaPredicted RBP8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 SBSNQ6UWP8 590 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 FA2HQ7L5A8 372 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 PRICKLE2Q7Z3G6 844 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 VRK2Q86Y07 508 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 TMEM251Q8N6I4 163 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 OR51S1Q8NGJ8 323 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 STARD4Q96DR4 205 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 THOC3Q96J01 351 aaKnown RBP8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 MS4A4EQ96PG1 132 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 C16orf70Q9BSU1 422 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 RBM24Q9BX46 236 aaKnown RBP8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 OR5H15A6NDH6 313 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 OR5H1A6NKK0 313 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 KLRC4-KLRK1H3BQV0 150 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 M0QYG6 137 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 TSPAN12O95859 305 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 LCATP04180 440 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 ZNF728P0DKX0 622 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 CD82P27701 267 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 ZNF787Q6DD87 383 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 OR7E24Q6IFN5 339 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 ZNF321PQ8N8H1 164 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 CDRT4Q8N9R6 151 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 IL1F10Q8WWZ1 152 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 TTC9Q92623 222 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 OR10C1Q96KK4 312 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 WFIKKN1Q96NZ8 548 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 TMEM191AQ9H0A3 160 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 POFUT1Q9H488 388 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 CUTCQ9NTM9 273 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 MTCH1Q9NZJ7 389 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 SOX21Q9Y651 276 aaPredicted RBP8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 A0A1B0GUH1 482 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 OR2A25A4D2G3 310 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 DBX1A6NMT0 343 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 UGDHO60701 494 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 CRABP1P29762 137 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 SRP9P49458 86 aaKnown RBP8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 TCTAP57738 103 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 TGFBR3Q03167 851 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 HIST3H3Q16695 136 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 ENTPD8Q5MY95 495 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 AADACL3Q5VUY0 350 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 NAXDQ8IW45 347 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 GPR137CQ8N3F9 429 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 PHYHIPQ92561 330 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 GHSRQ92847 366 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 KHSRPQ92945 711 aaKnown RBP eCLIP8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 FAM131CQ96AQ9 280 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 APH1AQ96BI3 265 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 TOE1Q96GM8 510 aaKnown RBP8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 C19orf43Q9BQ61 176 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 OR2D2Q9H210 308 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 MMP26Q9NRE1 261 aa8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 NXT1Q9UKK6 140 aaKnown RBP8.02□□□□□ -1.13
LIMCH1-218ENST00000513024 TPRP12270 2363 aaKnown RBP8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 CSF3P09919 207 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 CT45A10P0DMU9 189 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 OR5H8P0DN80 308 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 SRFP11831 508 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 RPL12P30050 165 aaKnown RBP8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 GABRA4P48169 554 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 PSMB2P49721 201 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 TBPL2Q6SJ96 375 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 OVCH1Q7RTY7 1134 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 LINC00518Q8N0U6 118 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 TTC9BQ8N6N2 239 aa8.01□□□□□ -1.13
LIMCH1-218ENST00000513024 SLC26A10Q8NG04 563 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms