RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 PRO1933Q9H354 126 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 KIR2DS5A0A0G2JLQ3 304 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 A0A0G2JNG1 304 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 SOWAHBA6NEL2 793 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 NKX6-3A6NJ46 265 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 CDRT15L2A8MXV6 281 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 KIR2DS3K7RE56 304 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 GPX5O75715 221 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 FAM87AP0C7U9 286 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 SMPD1P17405 629 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 POLR2IP36954 125 aaKnown RBP10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 ZNF140P52738 457 aaPredicted RBP10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 HLA-DRB3P79483 266 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 KIR2DS5Q14953 304 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 SYT14P1Q58G82 188 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 CDC20BQ86Y33 519 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 SLC38A5Q8WUX1 472 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 C3orf30Q96M34 536 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 PACRGQ96M98 296 aaPredicted RBP10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 SLC25A19Q9HC21 320 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 FKBP11Q9NYL4 201 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 LINC00862A6NCI5 91 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 C5orf52A6NGY3 159 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 IFITM5A6NNB3 132 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 HNRNPA1P09651 372 aaKnown RBP eCLIP10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 SLC25A4P12235 298 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 SELEP16581 610 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 ZNF17P17021 662 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 BMP5P22003 454 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 C6orf132Q5T0Z8 1188 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 C1QTNF12Q5T7M4 302 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 CPEB2Q7Z5Q1 589 aaKnown RBP10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 ZNF573Q86YE8 665 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 TMEM251Q8N6I4 163 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 WDR89Q96FK6 387 aaPredicted RBP10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 PTDSS2Q9BVG9 487 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 GPR62Q9BZJ7 368 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 KCNK15Q9H427 330 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 FGF20Q9NP95 211 aaPredicted RBP10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 SIRT3Q9NTG7 399 aaPredicted RBP10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 VDAC3Q9Y277 283 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 COL3A1P02461 1466 aaPredicted RBP10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 FIGNL2A6NMB9 653 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 FAM72CH0Y354 149 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 MAN2B1O00754 1011 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 FRS3O43559 492 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 QDPRP09417 244 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 TCN2P20062 427 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 EGR3Q06889 387 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 SYPL1Q16563 259 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 LEXMQ3ZCV2 418 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 FAM72AQ5TYM5 149 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 FAM72DQ6L9T8 149 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 WDR74Q6RFH5 385 aaPredicted RBP10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 ERASQ7Z444 233 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 FAM72BQ86X60 149 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 VRK2Q86Y07 508 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 TAAR6Q96RI8 345 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 OR1A1Q9P1Q5 309 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 LHX3Q9UBR4 397 aa10.31□□□□□ -0.76
LIMCH1-217ENST00000512946 ARPC3O15145 178 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 CFIP05156 583 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 RABIFP47224 123 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 ZXDBP98169 803 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 CTF1Q16619 201 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 PLAC9Q5JTB6 97 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 OR51F2Q8NH61 342 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 OR14A16Q8NHC5 309 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 ING1Q9UK53 422 aaPredicted RBP10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 POLDIP2Q9Y2S7 368 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 SLIT3O75094 1523 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 SLIT2O94813 1529 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 OR2T8A6NH00 312 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 SERINC4A6NH21 518 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 GFRA2O00451 464 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 PLRG1O43660 514 aaKnown RBP10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 ZFAND5O76080 213 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 SMIM17P0DL12 118 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 EN2P19622 333 aaPredicted RBP10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 BTF3P20290 206 aaKnown RBP10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 MEOX1P50221 254 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 THEM4Q5T1C6 240 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 OR2A2Q6IF42 318 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 OR2W3Q7Z3T1 314 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 PELI3Q8N2H9 469 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 WDTC1Q8N5D0 677 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 ASB11Q8WXH4 323 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 NEIL2Q969S2 332 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 SLC35A4Q96G79 324 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 EGLN2Q96KS0 407 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 TNFRSF13CQ96RJ3 184 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 PRRX2Q99811 253 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 TMED3Q9Y3Q3 217 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 MYH10P35580 1976 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 H3BML4 177 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 OR7C2O60412 319 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 PRAMEF4O60810 478 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 LRP3O75074 770 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 SOD2P04179 222 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 CYC1P08574 325 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms