RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 RPL22L1Q6P5R6 122 aaKnown RBP10.91□□□□□ -0.66
LIMCH1-213ENST00000511496 C11orf42Q8N5U0 333 aa10.91□□□□□ -0.66
LIMCH1-213ENST00000511496 LINC01465Q8N7H1 131 aa10.91□□□□□ -0.66
LIMCH1-213ENST00000511496 OR9K2Q8NGE7 335 aa10.91□□□□□ -0.66
LIMCH1-213ENST00000511496 TAAR8Q969N4 342 aa10.91□□□□□ -0.66
LIMCH1-213ENST00000511496 SLC35G5Q96KT7 338 aa10.91□□□□□ -0.66
LIMCH1-213ENST00000511496 C1QTNF2Q9BXJ5 285 aa10.91□□□□□ -0.66
LIMCH1-213ENST00000511496 MARCH5Q9NX47 278 aa10.91□□□□□ -0.66
LIMCH1-213ENST00000511496 MYOTQ9UBF9 498 aa10.91□□□□□ -0.66
LIMCH1-213ENST00000511496 IGLV3-10A0A075B6K4 115 aa10.9□□□□□ -0.66
LIMCH1-213ENST00000511496 TMEM269A0A1B0GVZ9 245 aa10.9□□□□□ -0.66
LIMCH1-213ENST00000511496 C1QL1O75973 258 aa10.9□□□□□ -0.66
LIMCH1-213ENST00000511496 CST2P09228 141 aa10.9□□□□□ -0.66
LIMCH1-213ENST00000511496 GALNSP34059 522 aa10.9□□□□□ -0.66
LIMCH1-213ENST00000511496 PPICP45877 212 aa10.9□□□□□ -0.66
LIMCH1-213ENST00000511496 SGSHP51688 502 aa10.9□□□□□ -0.66
LIMCH1-213ENST00000511496 LASP1Q14847 261 aaKnown RBP10.9□□□□□ -0.66
LIMCH1-213ENST00000511496 NKAIN1Q4KMZ8 207 aa10.9□□□□□ -0.66
LIMCH1-213ENST00000511496 RAB39BQ96DA2 213 aa10.9□□□□□ -0.66
LIMCH1-213ENST00000511496 MCHR1Q99705 422 aa10.9□□□□□ -0.66
LIMCH1-213ENST00000511496 MSRAQ9UJ68 235 aa10.9□□□□□ -0.66
LIMCH1-213ENST00000511496 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.9□□□□□ -0.66
LIMCH1-213ENST00000511496 RIIAD1A6NNX1 92 aa10.9□□□□□ -0.66
LIMCH1-213ENST00000511496 LEFTY2O00292 366 aa10.9□□□□□ -0.66
LIMCH1-213ENST00000511496 ITGB1BP1O14713 200 aa10.9□□□□□ -0.66
LIMCH1-213ENST00000511496 ZFPL1O95159 310 aa10.9□□□□□ -0.66
LIMCH1-213ENST00000511496 SNAI1O95863 264 aaPredicted RBP10.9□□□□□ -0.66
LIMCH1-213ENST00000511496 SCGB1D1O95968 90 aa10.9□□□□□ -0.66
LIMCH1-213ENST00000511496 CD37P11049 281 aa10.9□□□□□ -0.66
LIMCH1-213ENST00000511496 MAS1LP35410 378 aa10.9□□□□□ -0.66
LIMCH1-213ENST00000511496 CAMLGP49069 296 aa10.9□□□□□ -0.66
LIMCH1-213ENST00000511496 NPY4RP50391 375 aa10.9□□□□□ -0.66
LIMCH1-213ENST00000511496 ACTBP60709 375 aa10.9□□□□□ -0.66
LIMCH1-213ENST00000511496 ACTA2P62736 377 aa10.9□□□□□ -0.66
LIMCH1-213ENST00000511496 ACTG1P63261 375 aa10.9□□□□□ -0.66
LIMCH1-213ENST00000511496 ACTG2P63267 376 aa10.9□□□□□ -0.66
LIMCH1-213ENST00000511496 ACTC1P68032 377 aa10.9□□□□□ -0.66
LIMCH1-213ENST00000511496 ACTA1P68133 377 aa10.9□□□□□ -0.66
LIMCH1-213ENST00000511496 AGERQ15109 404 aa10.9□□□□□ -0.66
LIMCH1-213ENST00000511496 RNF219Q5W0B1 726 aaPredicted RBP10.9□□□□□ -0.66
LIMCH1-213ENST00000511496 THSD4Q6ZMP0 1018 aa10.9□□□□□ -0.66
LIMCH1-213ENST00000511496 ADAD2Q8NCV1 583 aaKnown RBP10.9□□□□□ -0.66
LIMCH1-213ENST00000511496 CHST13Q8NET6 341 aa10.9□□□□□ -0.66
LIMCH1-213ENST00000511496 OR5P2Q8WZ92 322 aa10.9□□□□□ -0.66
LIMCH1-213ENST00000511496 TM4SF18Q96CE8 201 aa10.9□□□□□ -0.66
LIMCH1-213ENST00000511496 ARSGQ96EG1 525 aa10.9□□□□□ -0.66
LIMCH1-213ENST00000511496 SLC41A3Q96GZ6 507 aa10.9□□□□□ -0.66
LIMCH1-213ENST00000511496 CD180Q99467 661 aa10.9□□□□□ -0.66
LIMCH1-213ENST00000511496 MENTQ9BUN1 341 aa10.9□□□□□ -0.66
LIMCH1-213ENST00000511496 GAL3ST2Q9H3Q3 398 aa10.9□□□□□ -0.66
LIMCH1-213ENST00000511496 NCOR1P1Q9H4R4 102 aa10.9□□□□□ -0.66
LIMCH1-213ENST00000511496 MARCH2Q9P0N8 246 aa10.9□□□□□ -0.66
LIMCH1-213ENST00000511496 HEATR5AQ86XA9 2040 aa10.9□□□□□ -0.66
LIMCH1-213ENST00000511496 COL5A3P25940 1745 aaPredicted RBP10.9□□□□□ -0.66
LIMCH1-213ENST00000511496 TCRBV21S2A2A0A5A6 115 aa10.9□□□□□ -0.67
LIMCH1-213ENST00000511496 UNC119BA6NIH7 251 aa10.9□□□□□ -0.67
LIMCH1-213ENST00000511496 F5H5T6 163 aa10.9□□□□□ -0.67
LIMCH1-213ENST00000511496 SOCS5O75159 536 aa10.9□□□□□ -0.67
LIMCH1-213ENST00000511496 B3GAT3O94766 335 aa10.9□□□□□ -0.67
LIMCH1-213ENST00000511496 RAC2P15153 192 aa10.9□□□□□ -0.67
LIMCH1-213ENST00000511496 AWAT2Q6E213 333 aa10.9□□□□□ -0.67
LIMCH1-213ENST00000511496 TPGS1Q6ZTW0 290 aa10.9□□□□□ -0.67
LIMCH1-213ENST00000511496 C16orf59Q7L2K0 433 aa10.9□□□□□ -0.67
LIMCH1-213ENST00000511496 ZNF761Q86XN6 746 aaPredicted RBP10.9□□□□□ -0.67
LIMCH1-213ENST00000511496 ZNF740Q8NDX6 193 aa10.9□□□□□ -0.67
LIMCH1-213ENST00000511496 DIO2Q92813 273 aa10.9□□□□□ -0.67
LIMCH1-213ENST00000511496 MYNNQ9NPC7 610 aa10.9□□□□□ -0.67
LIMCH1-213ENST00000511496 GLRX2Q9NS18 164 aa10.9□□□□□ -0.67
LIMCH1-213ENST00000511496 FOXJ2Q9P0K8 574 aa10.9□□□□□ -0.67
LIMCH1-213ENST00000511496 SLC7A7Q9UM01 511 aa10.9□□□□□ -0.67
LIMCH1-213ENST00000511496 ZFP37Q9Y6Q3 630 aaPredicted RBP10.9□□□□□ -0.67
LIMCH1-213ENST00000511496 TSPAN11A1L157 253 aa10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 GRM6O15303 877 aa10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 SLC16A8O95907 504 aa10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 MAP2K5Q13163 448 aa10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 LYPLAL1Q5VWZ2 237 aa10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 TMEM150AQ86TG1 271 aa10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 ZNF321PQ8N8H1 164 aa10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 APCDD1LQ8NCL9 501 aa10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 SEH1LQ96EE3 360 aa10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 GNRHR2Q96P88 292 aa10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 ACTR3CQ9C0K3 210 aaPredicted RBP10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 RAB22AQ9UL26 194 aa10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 ZNF281Q9Y2X9 895 aa10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 AQP7O14520 342 aa10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 EIF1AYO14602 144 aaKnown RBP10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 ATXN7O15265 892 aaPredicted RBP10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 KLK2P20151 261 aa10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 TACR2P21452 398 aa10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 EIF1AXP47813 144 aaKnown RBP10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 ELOCQ15369 112 aa10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 FBXW9Q5XUX1 488 aa10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 RFLNAQ6ZTI6 216 aa10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 GDF7Q7Z4P5 450 aa10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 TMEM173Q86WV6 379 aaPredicted RBP10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 MRPL41Q8IXM3 137 aaKnown RBP10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 PLPP5Q8NEB5 264 aa10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 TMEM40Q8WWA1 233 aa10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 FAM210BQ96KR6 192 aa10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 RARRES2Q99969 163 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms