RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 ZNF30P17039 623 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 HNRNPA2B1P22626 353 aaKnown RBP3.29□□□□□ -1.88
USP53-205ENST00000509769 AOAHP28039 575 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 NKX2-1P43699 371 aaPredicted RBP3.29□□□□□ -1.88
USP53-205ENST00000509769 NCBP2P52298 156 aaKnown RBP eCLIP3.29□□□□□ -1.88
USP53-205ENST00000509769 PNLIPRP2P54317 469 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 PCBD1P61457 104 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 RING1Q06587 406 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 TSPAN31Q12999 210 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 GANABQ14697 944 aaKnown RBP3.29□□□□□ -1.88
USP53-205ENST00000509769 CD226Q15762 336 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 ZNF789Q5FWF6 425 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 NXNL2Q5VZ03 156 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 GJB7Q6PEY0 223 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 DRAM2Q6UX65 266 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 CEACAM20Q6UY09 585 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 ASCL4Q6XD76 172 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 SCGB1D4Q6XE38 83 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 LBX2Q6XYB7 198 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 SPNS3Q6ZMD2 512 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 MRPL21Q7Z2W9 205 aaKnown RBP3.29□□□□□ -1.88
USP53-205ENST00000509769 SLC35E3Q7Z769 313 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 CMC1Q7Z7K0 106 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 MYPOPQ86VE0 399 aaPredicted RBP3.29□□□□□ -1.88
USP53-205ENST00000509769 OR52E2Q8NGJ4 325 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 OR2A1Q8NGT9 310 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 OR6N2Q8NGY6 317 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 OR14A16Q8NHC5 309 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 FAM151AQ8WW52 585 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 ESAMQ96AP7 390 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 ZNF775Q96BV0 537 aaPredicted RBP3.29□□□□□ -1.88
USP53-205ENST00000509769 DTD2Q96FN9 168 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 ABHD14BQ96IU4 210 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 SHDQ96IW2 340 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 DEFB118Q96PH6 123 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 OR6C1Q96RD1 312 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 ZNF300Q96RE9 604 aaPredicted RBP3.29□□□□□ -1.88
USP53-205ENST00000509769 ABHD1Q96SE0 405 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 ATF6BQ99941 703 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 C2orf88Q9BSF0 95 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 ZBP1Q9H171 429 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 NKX2-4Q9H2Z4 354 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 SIX2Q9NPC8 291 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 DMRT3Q9NQL9 472 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 ACSS2Q9NR19 701 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 SDR39U1Q9NRG7 319 aaPredicted RBP3.29□□□□□ -1.88
USP53-205ENST00000509769 TREX1Q9NSU2 369 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 C2orf42Q9NWW7 574 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 KIAA1522Q9P206 1035 aaPredicted RBP3.29□□□□□ -1.88
USP53-205ENST00000509769 C19orf25Q9UFG5 118 aaPredicted RBP3.29□□□□□ -1.88
USP53-205ENST00000509769 CBLCQ9ULV8 474 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 CORINQ9Y5Q5 1042 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 COL1A2P08123 1366 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 TRAV1-2A0A0B4J238 106 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 CLEC18AA5D8T8 446 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 CORTO00230 105 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 CDK2AP1O14519 115 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 ENPP3O14638 875 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 EPHB6O15197 1021 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 PIAS2O75928 621 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 CD14P08571 375 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 GSTP1P09211 210 aaKnown RBP3.29□□□□□ -1.88
USP53-205ENST00000509769 SLC35E2P0CK97 266 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 SMIM13P0DJ93 91 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 CTSEP14091 401 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 ZNF17P17021 662 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 FKBP2P26885 142 aaKnown RBP3.29□□□□□ -1.88
USP53-205ENST00000509769 ICAM3P32942 547 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 YBX1P67809 324 aaKnown RBP3.29□□□□□ -1.88
USP53-205ENST00000509769 EDDM3AQ14507 147 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 OR8G1Q15617 311 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 PYCR3Q53H96 274 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 NCMAPQ5T1S8 102 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 FAM78BQ5VT40 261 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 PODNL1Q6PEZ8 512 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 SUSD1Q6UWL2 747 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 SLC16A13Q7RTY0 426 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 COMMD6Q7Z4G1 85 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 SIAH3Q8IW03 269 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 UBALD2Q8IYN6 164 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 SLC22A24Q8N4F4 322 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 ARHGEF39Q8N4T4 335 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 CLEC18CQ8NCF0 446 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 OR2Y1Q8NGV0 311 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 OR52E5Q8NH55 327 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 MRPL24Q96A35 216 aaKnown RBP3.29□□□□□ -1.88
USP53-205ENST00000509769 MOB3AQ96BX8 217 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 KTI12Q96EK9 354 aaPredicted RBP3.29□□□□□ -1.88
USP53-205ENST00000509769 BTN2A3PQ96KV6 586 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 MRGPRX4Q96LA9 322 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 ST6GALNAC5Q9BVH7 336 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 NXF5Q9H1B4 397 aaKnown RBP3.29□□□□□ -1.88
USP53-205ENST00000509769 OR10A2Q9H208 303 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 HSD3B7Q9H2F3 369 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 DUSP21Q9H596 190 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 MTHFD2LQ9H903 347 aaPredicted RBP3.29□□□□□ -1.88
USP53-205ENST00000509769 ACER3Q9NUN7 267 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 B4GALT7Q9UBV7 327 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 OR51B2Q9Y5P1 312 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 USP3Q9Y6I4 520 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms