RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 LFNGQ8NES3 379 aa15□□□□□ -0.01
COL7A1-210ENST00000487017 ELSPBP1Q96BH3 223 aa15□□□□□ -0.01
COL7A1-210ENST00000487017 RNF170Q96K19 258 aa15□□□□□ -0.01
COL7A1-210ENST00000487017 CD27P26842 260 aa14.99□□□□□ -0.01
COL7A1-210ENST00000487017 FKBP2P26885 142 aaKnown RBP14.99□□□□□ -0.01
COL7A1-210ENST00000487017 PARM1Q6UWI2 310 aa14.99□□□□□ -0.01
COL7A1-210ENST00000487017 STAC2Q6ZMT1 411 aa14.99□□□□□ -0.01
COL7A1-210ENST00000487017 OR4N2Q8NGD1 307 aa14.99□□□□□ -0.01
COL7A1-210ENST00000487017 OR51E1Q8TCB6 317 aa14.99□□□□□ -0.01
COL7A1-210ENST00000487017 KIRREL1Q96J84 757 aa14.99□□□□□ -0.01
COL7A1-210ENST00000487017 EMC6Q9BV81 110 aa14.99□□□□□ -0.01
COL7A1-210ENST00000487017 BCO1Q9HAY6 547 aa14.99□□□□□ -0.01
COL7A1-210ENST00000487017 GNG12Q9UBI6 72 aa14.99□□□□□ -0.01
COL7A1-210ENST00000487017 SNRPGP15A8MWD9 76 aa14.99□□□□□ -0.01
COL7A1-210ENST00000487017 H7C1Q1 480 aa14.99□□□□□ -0.01
COL7A1-210ENST00000487017 TAAR5O14804 337 aa14.99□□□□□ -0.01
COL7A1-210ENST00000487017 DFFBO76075 338 aa14.99□□□□□ -0.01
COL7A1-210ENST00000487017 TAGLN2P37802 199 aaKnown RBP14.99□□□□□ -0.01
COL7A1-210ENST00000487017 AKR1C1Q04828 323 aa14.99□□□□□ -0.01
COL7A1-210ENST00000487017 FAM219BQ5XKK7 198 aa14.99□□□□□ -0.01
COL7A1-210ENST00000487017 FAAP20Q6NZ36 180 aa14.99□□□□□ -0.01
COL7A1-210ENST00000487017 TMEM71Q6P5X7 295 aa14.99□□□□□ -0.01
COL7A1-210ENST00000487017 OR51A2Q8NGJ7 313 aa14.99□□□□□ -0.01
COL7A1-210ENST00000487017 BTF3L4Q96K17 158 aa14.99□□□□□ -0.01
COL7A1-210ENST00000487017 TNRC6CQ9HCJ0 1690 aaKnown RBP14.99□□□□□ -0.01
COL7A1-210ENST00000487017 LRP5LA4QPB2 252 aa14.99□□□□□ -0.01
COL7A1-210ENST00000487017 CTSLP07711 333 aa14.99□□□□□ -0.01
COL7A1-210ENST00000487017 ALOX5APP20292 161 aa14.99□□□□□ -0.01
COL7A1-210ENST00000487017 MAGEB1P43366 347 aa14.99□□□□□ -0.01
COL7A1-210ENST00000487017 SNTB1Q13884 538 aaKnown RBP14.99□□□□□ -0.01
COL7A1-210ENST00000487017 C12orf73Q69YU5 71 aa14.99□□□□□ -0.01
COL7A1-210ENST00000487017 OR4A16Q8NH70 328 aa14.99□□□□□ -0.01
COL7A1-210ENST00000487017 UBL7Q96S82 380 aaPredicted RBP14.99□□□□□ -0.01
COL7A1-210ENST00000487017 SLIRPQ9GZT3 109 aaKnown RBP14.99□□□□□ -0.01
COL7A1-210ENST00000487017 IGHV3-20A0A0C4DH32 117 aa14.99□□□□□ -0.01
COL7A1-210ENST00000487017 HSD17B6O14756 317 aa14.99□□□□□ -0.01
COL7A1-210ENST00000487017 PPICP45877 212 aa14.99□□□□□ -0.01
COL7A1-210ENST00000487017 NLRC3Q7RTR2 1065 aa14.99□□□□□ -0.01
COL7A1-210ENST00000487017 MAML2Q8IZL2 1156 aaPredicted RBP14.99□□□□□ -0.01
COL7A1-210ENST00000487017 GPR160Q9UJ42 338 aa14.99□□□□□ -0.01
COL7A1-210ENST00000487017 EVPLQ92817 2033 aa14.99□□□□□ -0.01
COL7A1-210ENST00000487017 POM121BA6NF01 834 aa14.98□□□□□ -0.01
COL7A1-210ENST00000487017 ANKRD61A6NGH8 418 aa14.98□□□□□ -0.01
COL7A1-210ENST00000487017 GPR171O14626 319 aa14.98□□□□□ -0.01
COL7A1-210ENST00000487017 ADRB1P08588 477 aa14.98□□□□□ -0.01
COL7A1-210ENST00000487017 LAP3P28838 519 aa14.98□□□□□ -0.01
COL7A1-210ENST00000487017 SNCAP37840 140 aa14.98□□□□□ -0.01
COL7A1-210ENST00000487017 TCTE3Q8IZS6 198 aa14.98□□□□□ -0.01
COL7A1-210ENST00000487017 OR52H1Q8NGJ2 320 aa14.98□□□□□ -0.01
COL7A1-210ENST00000487017 UCN3Q969E3 161 aa14.98□□□□□ -0.01
COL7A1-210ENST00000487017 ECM29Q5VYK3 1845 aa14.98□□□□□ -0.01
COL7A1-210ENST00000487017 TMEM235A6NFC5 223 aa14.98□□□□□ -0.01
COL7A1-210ENST00000487017 THBS3P49746 956 aa14.98□□□□□ -0.01
COL7A1-210ENST00000487017 EXOSC2Q13868 293 aaKnown RBP14.98□□□□□ -0.01
COL7A1-210ENST00000487017 CPEB2Q7Z5Q1 589 aaKnown RBP14.98□□□□□ -0.01
COL7A1-210ENST00000487017 AUNIPQ9H7T9 357 aa14.98□□□□□ -0.01
COL7A1-210ENST00000487017 PLAC1Q9HBJ0 212 aa14.98□□□□□ -0.01
COL7A1-210ENST00000487017 ZNF629Q9UEG4 869 aaPredicted RBP14.98□□□□□ -0.01
COL7A1-210ENST00000487017 AKR7A2O43488 359 aa14.98□□□□□ -0.01
COL7A1-210ENST00000487017 RGS11O94810 467 aa14.98□□□□□ -0.01
COL7A1-210ENST00000487017 OR13C8Q8NGS7 320 aa14.98□□□□□ -0.01
COL7A1-210ENST00000487017 ARSGQ96EG1 525 aa14.98□□□□□ -0.01
COL7A1-210ENST00000487017 SPNS1Q9H2V7 528 aa14.98□□□□□ -0.01
COL7A1-210ENST00000487017 FBXL4Q9UKA2 621 aa14.98□□□□□ -0.01
COL7A1-210ENST00000487017 NXPH2O95156 264 aa14.98□□□□□ -0.01
COL7A1-210ENST00000487017 CBR1P16152 277 aa14.98□□□□□ -0.01
COL7A1-210ENST00000487017 AGERQ15109 404 aa14.98□□□□□ -0.01
COL7A1-210ENST00000487017 SEH1LQ96EE3 360 aa14.98□□□□□ -0.01
COL7A1-210ENST00000487017 CNRIP1Q96F85 164 aaPredicted RBP14.98□□□□□ -0.01
COL7A1-210ENST00000487017 PTDSS2Q9BVG9 487 aa14.98□□□□□ -0.01
COL7A1-210ENST00000487017 TRAPPC4Q9Y296 219 aa14.98□□□□□ -0.01
COL7A1-210ENST00000487017 A0A0A6YYD5 115 aa14.98□□□□□ -0.01
COL7A1-210ENST00000487017 SCAF4O95104 1147 aaKnown RBP14.98□□□□□ -0.01
COL7A1-210ENST00000487017 KIR2DL3P43628 341 aa14.98□□□□□ -0.01
COL7A1-210ENST00000487017 EMDP50402 254 aa14.98□□□□□ -0.01
COL7A1-210ENST00000487017 FXNQ16595 210 aa14.98□□□□□ -0.01
COL7A1-210ENST00000487017 OR2G3Q8NGZ4 309 aa14.98□□□□□ -0.01
COL7A1-210ENST00000487017 ST8SIA4Q92187 359 aa14.98□□□□□ -0.01
COL7A1-210ENST00000487017 OR6C76A6NM76 312 aa14.97□□□□□ -0.01
COL7A1-210ENST00000487017 ST8SIA3O43173 380 aa14.97□□□□□ -0.01
COL7A1-210ENST00000487017 DUSP1P28562 367 aa14.97□□□□□ -0.01
COL7A1-210ENST00000487017 NDUFA6P56556 154 aa14.97□□□□□ -0.01
COL7A1-210ENST00000487017 RUNX2Q13950 521 aa14.97□□□□□ -0.01
COL7A1-210ENST00000487017 EXT1Q16394 746 aa14.97□□□□□ -0.01
COL7A1-210ENST00000487017 RBMXL3Q8N7X1 1067 aaKnown RBP14.97□□□□□ -0.01
COL7A1-210ENST00000487017 ZCCHC4Q9H5U6 513 aa14.97□□□□□ -0.01
COL7A1-210ENST00000487017 C6orf106Q9H6K1 298 aaPredicted RBP14.97□□□□□ -0.01
COL7A1-210ENST00000487017 TRAV1-2A0A0B4J238 106 aa14.97□□□□□ -0.01
COL7A1-210ENST00000487017 OR5H14A6NHG9 310 aa14.97□□□□□ -0.01
COL7A1-210ENST00000487017 HPNP05981 417 aa14.97□□□□□ -0.01
COL7A1-210ENST00000487017 MLF2Q15773 248 aaPredicted RBP14.97□□□□□ -0.01
COL7A1-210ENST00000487017 PXDC1Q5TGL8 231 aa14.97□□□□□ -0.01
COL7A1-210ENST00000487017 HIST2H3AQ71DI3 136 aa14.97□□□□□ -0.01
COL7A1-210ENST00000487017 ZNF680Q8NEM1 530 aa14.97□□□□□ -0.01
COL7A1-210ENST00000487017 OR5M1Q8NGP8 315 aa14.97□□□□□ -0.01
COL7A1-210ENST00000487017 OR2A1Q8NGT9 310 aa14.97□□□□□ -0.01
COL7A1-210ENST00000487017 OR10Z1Q8NGY1 313 aa14.97□□□□□ -0.01
COL7A1-210ENST00000487017 NANPQ8TBE9 248 aa14.97□□□□□ -0.01
COL7A1-210ENST00000487017 C14orf79Q96F83 325 aa14.97□□□□□ -0.01
COL7A1-210ENST00000487017 S1PR5Q9H228 398 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms