RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 OR2Z1Q8NG97 314 aa4.34□□□□□ -1.71
PTPN4-209ENST00000469511 SSMEM1Q8WWF3 244 aa4.34□□□□□ -1.71
PTPN4-209ENST00000469511 NRG4Q8WWG1 115 aa4.34□□□□□ -1.71
PTPN4-209ENST00000469511 CFHR4Q92496 578 aa4.34□□□□□ -1.71
PTPN4-209ENST00000469511 LHX4Q969G2 390 aa4.34□□□□□ -1.71
PTPN4-209ENST00000469511 SLC7A6OSQ96CW6 309 aaPredicted RBP4.34□□□□□ -1.71
PTPN4-209ENST00000469511 FAM71F1Q96KD3 344 aaPredicted RBP4.34□□□□□ -1.71
PTPN4-209ENST00000469511 PPP1R36Q96LQ0 422 aa4.34□□□□□ -1.71
PTPN4-209ENST00000469511 PPP3R2Q96LZ3 170 aa4.34□□□□□ -1.71
PTPN4-209ENST00000469511 TRNT1Q96Q11 434 aaKnown RBP4.34□□□□□ -1.71
PTPN4-209ENST00000469511 SLC35A5Q9BS91 424 aa4.34□□□□□ -1.71
PTPN4-209ENST00000469511 BCL2L14Q9BZR8 327 aa4.34□□□□□ -1.71
PTPN4-209ENST00000469511 DPY30Q9C005 99 aa4.34□□□□□ -1.71
PTPN4-209ENST00000469511 EGLN1Q9GZT9 426 aa4.34□□□□□ -1.71
PTPN4-209ENST00000469511 RAB17Q9H0T7 212 aa4.34□□□□□ -1.71
PTPN4-209ENST00000469511 OR10A2Q9H208 303 aa4.34□□□□□ -1.71
PTPN4-209ENST00000469511 DENND2DQ9H6A0 471 aaPredicted RBP4.34□□□□□ -1.71
PTPN4-209ENST00000469511 MTHFD2LQ9H903 347 aaPredicted RBP4.34□□□□□ -1.71
PTPN4-209ENST00000469511 NANOGQ9H9S0 305 aa4.34□□□□□ -1.71
PTPN4-209ENST00000469511 ACOXLQ9NUZ1 547 aa4.34□□□□□ -1.71
PTPN4-209ENST00000469511 ATAD3AQ9NVI7 634 aa4.34□□□□□ -1.71
PTPN4-209ENST00000469511 GLTPQ9NZD2 209 aa4.34□□□□□ -1.71
PTPN4-209ENST00000469511 CTSZQ9UBR2 303 aa4.34□□□□□ -1.71
PTPN4-209ENST00000469511 NIPSNAP3AQ9UFN0 247 aaPredicted RBP4.34□□□□□ -1.71
PTPN4-209ENST00000469511 IL20RAQ9UHF4 553 aa4.34□□□□□ -1.71
PTPN4-209ENST00000469511 ZNF443Q9Y2A4 671 aaPredicted RBP4.34□□□□□ -1.71
PTPN4-209ENST00000469511 LRCH1Q9Y2L9 728 aa4.34□□□□□ -1.71
PTPN4-209ENST00000469511 PCDHGB5Q9Y5G0 923 aa4.34□□□□□ -1.71
PTPN4-209ENST00000469511 POMT1Q9Y6A1 747 aa4.34□□□□□ -1.71
PTPN4-209ENST00000469511 IGHV1-69DA0A0B4J2H0 117 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 PRSS51A0A1B0GVH4 220 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 EXOC1LA0A1B0GW35 172 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 A0A1B0GWA3 101 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 C5orf49A4QMS7 147 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 PLPP3O14495 311 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 TPST2O60704 377 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 LYPLA1O75608 230 aaPredicted RBP4.33□□□□□ -1.72
PTPN4-209ENST00000469511 AGR2O95994 175 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 IGHV1-69P01742 117 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 DBIP07108 87 aaKnown RBP4.33□□□□□ -1.72
PTPN4-209ENST00000469511 QDPRP09417 244 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 NR2F1P10589 423 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 CD28P10747 220 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 ETFAP13804 333 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 NQO1P15559 274 aaKnown RBP4.33□□□□□ -1.72
PTPN4-209ENST00000469511 ZNF32P17041 273 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 AHCYP23526 432 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 GTF2E2P29084 291 aaKnown RBP4.33□□□□□ -1.72
PTPN4-209ENST00000469511 IL12AP29459 219 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 ALDH3A1P30838 453 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 CHI3L1P36222 383 aaPredicted RBP4.33□□□□□ -1.72
PTPN4-209ENST00000469511 RPL4P36578 427 aaKnown RBP4.33□□□□□ -1.72
PTPN4-209ENST00000469511 GNALP38405 381 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 MDH2P40926 338 aaKnown RBP4.33□□□□□ -1.72
PTPN4-209ENST00000469511 EFNB2P52799 333 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 MVDP53602 400 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 COPZ1P61923 177 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 PPP1CBP62140 327 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 ELF3P78545 371 aaPredicted RBP4.33□□□□□ -1.72
PTPN4-209ENST00000469511 HPCAP84074 193 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 PSG4Q00888 419 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 NFYCQ13952 458 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 HABP2Q14520 560 aaPredicted RBP4.33□□□□□ -1.72
PTPN4-209ENST00000469511 LARS2Q15031 903 aaKnown RBP4.33□□□□□ -1.72
PTPN4-209ENST00000469511 GTDC1Q4AE62 458 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 FAM69AQ5T7M9 428 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 DHRS7BQ6IAN0 325 aaPredicted RBP4.33□□□□□ -1.72
PTPN4-209ENST00000469511 TMEM53Q6P2H8 277 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 SLC16A14Q7RTX9 510 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 LDLRAD3Q86YD5 345 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 KLHDC1Q8N7A1 406 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 RBM15BQ8NDT2 890 aaKnown RBP4.33□□□□□ -1.72
PTPN4-209ENST00000469511 OR8J2Q8NGG1 315 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 TBC1D15Q8TC07 691 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 OIT3Q8WWZ8 545 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 MCHR2Q969V1 340 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 NEIL1Q96FI4 390 aaPredicted RBP4.33□□□□□ -1.72
PTPN4-209ENST00000469511 SAMD8Q96LT4 415 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 OR2V2Q96R30 315 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 ZNF347Q96SE7 839 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 SIRPDQ9H106 197 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 PPA2Q9H2U2 334 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 B3GAT2Q9NPZ5 323 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 DNAJB11Q9UBS4 358 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 DCDC2Q9UHG0 476 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 PPP1R3CQ9UQK1 317 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 LYSTQ99698 3801 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 PCLOQ9Y6V0 5065 aa4.33□□□□□ -1.72
PTPN4-209ENST00000469511 CSMD3Q7Z407 3707 aa4.32□□□□□ -1.72
PTPN4-209ENST00000469511 TRAV36DV7A0A075B6V5 113 aa4.32□□□□□ -1.72
PTPN4-209ENST00000469511 A0A087WUV0 522 aaPredicted RBP4.32□□□□□ -1.72
PTPN4-209ENST00000469511 IQCMA0A1B0GVH7 501 aa4.32□□□□□ -1.72
PTPN4-209ENST00000469511 PLSCR5A0PG75 271 aa4.32□□□□□ -1.72
PTPN4-209ENST00000469511 CCDC154A6NI56 674 aa4.32□□□□□ -1.72
PTPN4-209ENST00000469511 ZNF879B4DU55 563 aa4.32□□□□□ -1.72
PTPN4-209ENST00000469511 H3BQF6 201 aa4.32□□□□□ -1.72
PTPN4-209ENST00000469511 ZSCAN12O43309 604 aa4.32□□□□□ -1.72
PTPN4-209ENST00000469511 AKAP8O43823 692 aaKnown RBP4.32□□□□□ -1.72
PTPN4-209ENST00000469511 TIMM8AO60220 97 aaPredicted RBP4.32□□□□□ -1.72
PTPN4-209ENST00000469511 TPST1O60507 370 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms