RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 DCTN6O00399 190 aa15.33■□□□□ 0.04
COL7A1-205ENST00000465238 MITFO75030 526 aaPredicted RBP15.33■□□□□ 0.04
COL7A1-205ENST00000465238 CELA3BP08861 270 aa15.33■□□□□ 0.04
COL7A1-205ENST00000465238 CST2P09228 141 aa15.33■□□□□ 0.04
COL7A1-205ENST00000465238 CECR9P0C854 216 aa15.33■□□□□ 0.04
COL7A1-205ENST00000465238 BMP4P12644 408 aa15.33■□□□□ 0.04
COL7A1-205ENST00000465238 ZNF3P17036 446 aa15.33■□□□□ 0.04
COL7A1-205ENST00000465238 IGFBP5P24593 272 aa15.33■□□□□ 0.04
COL7A1-205ENST00000465238 PCBD1P61457 104 aa15.33■□□□□ 0.04
COL7A1-205ENST00000465238 CDK5Q00535 292 aa15.33■□□□□ 0.04
COL7A1-205ENST00000465238 PLP2Q04941 152 aa15.33■□□□□ 0.04
COL7A1-205ENST00000465238 RAB39AQ14964 217 aa15.33■□□□□ 0.04
COL7A1-205ENST00000465238 RAB35Q15286 201 aa15.33■□□□□ 0.04
COL7A1-205ENST00000465238 ZNF362Q5T0B9 420 aaPredicted RBP15.33■□□□□ 0.04
COL7A1-205ENST00000465238 ACSM5Q6NUN0 579 aa15.33■□□□□ 0.04
COL7A1-205ENST00000465238 B3GLCTQ6Y288 498 aa15.33■□□□□ 0.04
COL7A1-205ENST00000465238 PQLC1Q8N2U9 271 aa15.33■□□□□ 0.04
COL7A1-205ENST00000465238 IL17RDQ8NFM7 739 aa15.33■□□□□ 0.04
COL7A1-205ENST00000465238 OR10H5Q8NGA6 315 aa15.33■□□□□ 0.04
COL7A1-205ENST00000465238 OR2T4Q8NH00 348 aa15.33■□□□□ 0.04
COL7A1-205ENST00000465238 SPATA3Q8NHX4 192 aa15.33■□□□□ 0.04
COL7A1-205ENST00000465238 PLEKHA8Q96JA3 519 aa15.33■□□□□ 0.04
COL7A1-205ENST00000465238 DDOQ99489 341 aa15.33■□□□□ 0.04
COL7A1-205ENST00000465238 RACGAP1Q9H0H5 632 aa15.33■□□□□ 0.04
COL7A1-205ENST00000465238 EMC7Q9NPA0 242 aa15.33■□□□□ 0.04
COL7A1-205ENST00000465238 CMC2Q9NRP2 79 aa15.33■□□□□ 0.04
COL7A1-205ENST00000465238 MOKQ9UQ07 419 aa15.33■□□□□ 0.04
COL7A1-205ENST00000465238 IGLV1-36A0A0B4J1U3 117 aa15.32■□□□□ 0.04
COL7A1-205ENST00000465238 IQCMA0A1B0GVH7 501 aa15.32■□□□□ 0.04
COL7A1-205ENST00000465238 PTHP01270 115 aa15.32■□□□□ 0.04
COL7A1-205ENST00000465238 HLA-DQA2P01906 255 aa15.32■□□□□ 0.04
COL7A1-205ENST00000465238 SCG5P05408 212 aa15.32■□□□□ 0.04
COL7A1-205ENST00000465238 ZNF32P17041 273 aa15.32■□□□□ 0.04
COL7A1-205ENST00000465238 NAAAQ02083 359 aa15.32■□□□□ 0.04
COL7A1-205ENST00000465238 HSF2Q03933 536 aa15.32■□□□□ 0.04
COL7A1-205ENST00000465238 GLO1Q04760 184 aa15.32■□□□□ 0.04
COL7A1-205ENST00000465238 CRMP1Q14194 572 aa15.32■□□□□ 0.04
COL7A1-205ENST00000465238 TMEM236Q5W0B7 351 aa15.32■□□□□ 0.04
COL7A1-205ENST00000465238 ZBTB46Q86UZ6 589 aa15.32■□□□□ 0.04
COL7A1-205ENST00000465238 PROKR2Q8NFJ6 384 aa15.32■□□□□ 0.04
COL7A1-205ENST00000465238 OTULINQ96BN8 352 aa15.32■□□□□ 0.04
COL7A1-205ENST00000465238 FBXO17Q96EF6 278 aa15.32■□□□□ 0.04
COL7A1-205ENST00000465238 ZNF75AQ96N20 296 aa15.32■□□□□ 0.04
COL7A1-205ENST00000465238 CIB1Q99828 191 aa15.32■□□□□ 0.04
COL7A1-205ENST00000465238 WACQ9BTA9 647 aa15.32■□□□□ 0.04
COL7A1-205ENST00000465238 ZNF416Q9BWM5 594 aa15.32■□□□□ 0.04
COL7A1-205ENST00000465238 SLC25A19Q9HC21 320 aa15.32■□□□□ 0.04
COL7A1-205ENST00000465238 TIMM10BQ9Y5J6 103 aa15.32■□□□□ 0.04
COL7A1-205ENST00000465238 ORC6Q9Y5N6 252 aa15.32■□□□□ 0.04
COL7A1-205ENST00000465238 ATP23Q9Y6H3 246 aa15.32■□□□□ 0.04
COL7A1-205ENST00000465238 A8MV72 311 aaPredicted RBP15.31■□□□□ 0.04
COL7A1-205ENST00000465238 ATP6V1G2-DDX39BF2Z307 99 aa15.31■□□□□ 0.04
COL7A1-205ENST00000465238 MPZL1O95297 269 aa15.31■□□□□ 0.04
COL7A1-205ENST00000465238 SERPINA5P05154 406 aa15.31■□□□□ 0.04
COL7A1-205ENST00000465238 MMP7P09237 267 aaPredicted RBP15.31■□□□□ 0.04
COL7A1-205ENST00000465238 ZNF14P17017 642 aaPredicted RBP15.31■□□□□ 0.04
COL7A1-205ENST00000465238 PAICSP22234 425 aaKnown RBP15.31■□□□□ 0.04
COL7A1-205ENST00000465238 APOBEC3AP31941 199 aaPredicted RBP15.31■□□□□ 0.04
COL7A1-205ENST00000465238 LSM6P62312 80 aaKnown RBP15.31■□□□□ 0.04
COL7A1-205ENST00000465238 ENDOGQ14249 297 aaKnown RBP15.31■□□□□ 0.04
COL7A1-205ENST00000465238 PTGES3Q15185 160 aaKnown RBP15.31■□□□□ 0.04
COL7A1-205ENST00000465238 KCNMB1Q16558 191 aa15.31■□□□□ 0.04
COL7A1-205ENST00000465238 UGT2A3Q6UWM9 527 aa15.31■□□□□ 0.04
COL7A1-205ENST00000465238 SYT9Q86SS6 491 aa15.31■□□□□ 0.04
COL7A1-205ENST00000465238 ALDH16A1Q8IZ83 802 aa15.31■□□□□ 0.04
COL7A1-205ENST00000465238 OR9Q1Q8NGQ5 310 aa15.31■□□□□ 0.04
COL7A1-205ENST00000465238 C11orf40Q8WZ69 217 aa15.31■□□□□ 0.04
COL7A1-205ENST00000465238 MS4A3Q96HJ5 214 aa15.31■□□□□ 0.04
COL7A1-205ENST00000465238 C9orf16Q9BUW7 83 aa15.31■□□□□ 0.04
COL7A1-205ENST00000465238 C1orf198Q9H425 327 aa15.31■□□□□ 0.04
COL7A1-205ENST00000465238 TMEFF2Q9UIK5 374 aaPredicted RBP15.31■□□□□ 0.04
COL7A1-205ENST00000465238 POLR1DQ9Y2S0 133 aa15.31■□□□□ 0.04
COL7A1-205ENST00000465238 YLPM1P49750 1951 aaKnown RBP15.31■□□□□ 0.04
COL7A1-205ENST00000465238 A0A096LNT2 108 aa15.3■□□□□ 0.04
COL7A1-205ENST00000465238 SURF4O15260 269 aa15.3■□□□□ 0.04
COL7A1-205ENST00000465238 GPANK1O95872 356 aa15.3■□□□□ 0.04
COL7A1-205ENST00000465238 IFNA2P01563 188 aa15.3■□□□□ 0.04
COL7A1-205ENST00000465238 SLC25A16P16260 332 aa15.3■□□□□ 0.04
COL7A1-205ENST00000465238 PYCR1P32322 319 aa15.3■□□□□ 0.04
COL7A1-205ENST00000465238 SLC25A1P53007 311 aa15.3■□□□□ 0.04
COL7A1-205ENST00000465238 LOXL1Q08397 574 aaPredicted RBP15.3■□□□□ 0.04
COL7A1-205ENST00000465238 DAG1Q14118 895 aa15.3■□□□□ 0.04
COL7A1-205ENST00000465238 PABPC1L2AQ5JQF8 200 aa15.3■□□□□ 0.04
COL7A1-205ENST00000465238 ARFGEF3Q5TH69 2177 aa15.3■□□□□ 0.04
COL7A1-205ENST00000465238 ZSCAN2Q7Z7L9 614 aaPredicted RBP15.3■□□□□ 0.04
COL7A1-205ENST00000465238 MYPOPQ86VE0 399 aaPredicted RBP15.3■□□□□ 0.04
COL7A1-205ENST00000465238 CBR4Q8N4T8 237 aa15.3■□□□□ 0.04
COL7A1-205ENST00000465238 OR4F15Q8NGB8 312 aa15.3■□□□□ 0.04
COL7A1-205ENST00000465238 OR1J2Q8NGS2 313 aa15.3■□□□□ 0.04
COL7A1-205ENST00000465238 PRRG3Q9BZD7 231 aa15.3■□□□□ 0.04
COL7A1-205ENST00000465238 TVP23BQ9NYZ1 205 aa15.3■□□□□ 0.04
COL7A1-205ENST00000465238 PMF1-BGLAPU3KQ54 211 aa15.3■□□□□ 0.04
COL7A1-205ENST00000465238 IGHV2OR16-5A0A0B4J2B6 119 aa15.29■□□□□ 0.04
COL7A1-205ENST00000465238 PRR23D1E9PI22 279 aaPredicted RBP15.29■□□□□ 0.04
COL7A1-205ENST00000465238 EI24O14681 340 aa15.29■□□□□ 0.04
COL7A1-205ENST00000465238 GPRIN2O60269 458 aa15.29■□□□□ 0.04
COL7A1-205ENST00000465238 PRR23D2P0DMB1 279 aaPredicted RBP15.29■□□□□ 0.04
COL7A1-205ENST00000465238 GAAP10253 952 aa15.29■□□□□ 0.04
COL7A1-205ENST00000465238 SPI1P17947 270 aa15.29■□□□□ 0.04
COL7A1-205ENST00000465238 CALCRP30988 508 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms