RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 NSG1P42857 185 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 RPS9P46781 194 aaKnown RBP3.37□□□□□ -1.87
VPS29-202ENST00000447578 GNPDA1P46926 289 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 ALDH3B2P48448 385 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 NOVA1P51513 510 aaKnown RBP3.37□□□□□ -1.87
VPS29-202ENST00000447578 TMEM50BP56557 158 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 RPS14P62263 151 aaKnown RBP3.37□□□□□ -1.87
VPS29-202ENST00000447578 ESRRGP62508 458 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 RPL23AP62750 156 aaKnown RBP3.37□□□□□ -1.87
VPS29-202ENST00000447578 SLC7A9P82251 487 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 EWSR1Q01844 656 aaKnown RBP eCLIP3.37□□□□□ -1.87
VPS29-202ENST00000447578 RGS1Q08116 209 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 KIAA0040Q15053 153 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 ZNF146Q15072 292 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 CARD16Q5EG05 197 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 C22orf39Q6P5X5 142 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 TTC33Q6PID6 262 aaPredicted RBP3.37□□□□□ -1.87
VPS29-202ENST00000447578 ADAMTSL5Q6ZMM2 481 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 Q6ZPB1 254 aaPredicted RBP3.37□□□□□ -1.87
VPS29-202ENST00000447578 HSD11B1LQ7Z5J1 315 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 OFCC1Q8IZS5 231 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 CMTM8Q8IZV2 173 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 LRRC75A-AS1Q8N1F1 130 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 CLEC4FQ8N1N0 589 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 UBE2J2Q8N2K1 259 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 TCAIMQ8N3R3 496 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 DHRSXQ8N5I4 330 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 KRTCAP2Q8N6L1 136 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 ZNF248Q8NDW4 579 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 OR8J3Q8NGG0 315 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 OR5D13Q8NGL4 314 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 OR10A6Q8NH74 314 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 OR2T6Q8NHC8 308 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 CLHC1Q8NHS4 586 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 C11orf45Q8TAV5 145 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 ISG20Q96AZ6 181 aaKnown RBP3.37□□□□□ -1.87
VPS29-202ENST00000447578 TMIGD2Q96BF3 282 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 ZNF689Q96CS4 500 aaPredicted RBP3.37□□□□□ -1.87
VPS29-202ENST00000447578 SDSLQ96GA7 329 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 RNF145Q96MT1 663 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 LYSMD1Q96S90 227 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 COPS8Q99627 209 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 CGREF1Q99674 301 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 ST6GALNAC5Q9BVH7 336 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 UGT2B28Q9BY64 529 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 RPF2Q9H7B2 306 aaKnown RBP3.37□□□□□ -1.87
VPS29-202ENST00000447578 METTL7AQ9H8H3 244 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 MOB1AQ9H8S9 216 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 RDH14Q9HBH5 336 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 FGF22Q9HCT0 170 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 RAB18Q9NP72 206 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP3.37□□□□□ -1.87
VPS29-202ENST00000447578 DDX18Q9NVP1 670 aaKnown RBP3.37□□□□□ -1.87
VPS29-202ENST00000447578 SMOXQ9NWM0 555 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 VAPAQ9P0L0 249 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 RSL24D1Q9UHA3 163 aaKnown RBP3.37□□□□□ -1.87
VPS29-202ENST00000447578 CD84Q9UIB8 345 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 RARRES3Q9UL19 164 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 PDE10AQ9Y233 779 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 TMED5Q9Y3A6 229 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 GMPPBQ9Y5P6 360 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 FADS3Q9Y5Q0 445 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 AUP1Q9Y679 476 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 SHROOM3Q8TF72 1996 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 DOCK3Q8IZD9 2030 aa3.36□□□□□ -1.87
VPS29-202ENST00000447578 A0A087WXM4 84 aa3.36□□□□□ -1.87
VPS29-202ENST00000447578 TRGV8A0A0C4DH27 118 aa3.36□□□□□ -1.87
VPS29-202ENST00000447578 FAM220BPB1ANY3 271 aa3.36□□□□□ -1.87
VPS29-202ENST00000447578 NPIPA7E9PJI5 369 aa3.36□□□□□ -1.87
VPS29-202ENST00000447578 G3V2T6 193 aa3.36□□□□□ -1.87
VPS29-202ENST00000447578 CXCR6O00574 342 aa3.36□□□□□ -1.87
VPS29-202ENST00000447578 DLGAP1O14490 977 aa3.36□□□□□ -1.87
VPS29-202ENST00000447578 GNGT2O14610 69 aa3.36□□□□□ -1.87
VPS29-202ENST00000447578 LRATO95237 230 aa3.36□□□□□ -1.87
VPS29-202ENST00000447578 DUS4LO95620 317 aaKnown RBP3.36□□□□□ -1.87
VPS29-202ENST00000447578 POP4O95707 220 aaKnown RBP3.36□□□□□ -1.87
VPS29-202ENST00000447578 SNAP29O95721 258 aa3.36□□□□□ -1.87
VPS29-202ENST00000447578 PDYNP01213 254 aa3.36□□□□□ -1.87
VPS29-202ENST00000447578 IL6P05231 212 aa3.36□□□□□ -1.87
VPS29-202ENST00000447578 C8GP07360 202 aa3.36□□□□□ -1.87
VPS29-202ENST00000447578 HBQ1P09105 142 aa3.36□□□□□ -1.87
VPS29-202ENST00000447578 GNAO1P09471 354 aa3.36□□□□□ -1.87
VPS29-202ENST00000447578 HSMCR30P0CW71 290 aa3.36□□□□□ -1.87
VPS29-202ENST00000447578 MPC1LP0DKB6 136 aa3.36□□□□□ -1.87
VPS29-202ENST00000447578 NPIPA8P0DM63 369 aa3.36□□□□□ -1.87
VPS29-202ENST00000447578 PNMTP11086 282 aa3.36□□□□□ -1.87
VPS29-202ENST00000447578 ATP1B2P14415 290 aaPredicted RBP3.36□□□□□ -1.87
VPS29-202ENST00000447578 TBXA2RP21731 343 aa3.36□□□□□ -1.87
VPS29-202ENST00000447578 LAP3P28838 519 aa3.36□□□□□ -1.87
VPS29-202ENST00000447578 S100A3P33764 101 aa3.36□□□□□ -1.87
VPS29-202ENST00000447578 SHMT2P34897 504 aa3.36□□□□□ -1.87
VPS29-202ENST00000447578 HPCAL1P37235 193 aa3.36□□□□□ -1.87
VPS29-202ENST00000447578 BDKRB1P46663 353 aa3.36□□□□□ -1.87
VPS29-202ENST00000447578 SPINT3P49223 89 aa3.36□□□□□ -1.87
VPS29-202ENST00000447578 POU3F4P49335 361 aa3.36□□□□□ -1.87
VPS29-202ENST00000447578 CDK9P50750 372 aaKnown RBP3.36□□□□□ -1.87
VPS29-202ENST00000447578 RIDAP52758 137 aaKnown RBP3.36□□□□□ -1.87
VPS29-202ENST00000447578 NDUFV3P56181 108 aaKnown RBP3.36□□□□□ -1.87
VPS29-202ENST00000447578 CLDN8P56748 225 aa3.36□□□□□ -1.87
VPS29-202ENST00000447578 SRPXP78539 464 aa3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms