RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 FPR2P25090 351 aa12.27□□□□□ -0.45
SDC1-204ENST00000429035 SCRN3Q0VDG4 424 aa12.27□□□□□ -0.45
SDC1-204ENST00000429035 RBMS3Q6XE24 437 aaKnown RBP12.27□□□□□ -0.45
SDC1-204ENST00000429035 ZER1Q7Z7L7 766 aa12.27□□□□□ -0.45
SDC1-204ENST00000429035 C1orf174Q8IYL3 243 aa12.27□□□□□ -0.45
SDC1-204ENST00000429035 SPICQ8N5J4 248 aa12.27□□□□□ -0.45
SDC1-204ENST00000429035 POU5F2Q8N7G0 328 aa12.27□□□□□ -0.45
SDC1-204ENST00000429035 LRRC75AQ8NAA5 344 aa12.27□□□□□ -0.45
SDC1-204ENST00000429035 NPEPL1Q8NDH3 523 aa12.27□□□□□ -0.45
SDC1-204ENST00000429035 ITLN1Q8WWA0 313 aa12.27□□□□□ -0.45
SDC1-204ENST00000429035 RCN3Q96D15 328 aa12.27□□□□□ -0.45
SDC1-204ENST00000429035 ZNF570Q96NI8 536 aa12.27□□□□□ -0.45
SDC1-204ENST00000429035 DUX5Q96PT3 197 aa12.27□□□□□ -0.45
SDC1-204ENST00000429035 NDEL1Q9GZM8 345 aa12.27□□□□□ -0.45
SDC1-204ENST00000429035 TMEM106BQ9NUM4 274 aa12.27□□□□□ -0.45
SDC1-204ENST00000429035 MRGBPQ9NV56 204 aa12.27□□□□□ -0.45
SDC1-204ENST00000429035 PURGQ9UJV8 347 aaKnown RBP12.27□□□□□ -0.45
SDC1-204ENST00000429035 POLR1DQ9Y2S0 133 aa12.27□□□□□ -0.45
SDC1-204ENST00000429035 ADAM18Q9Y3Q7 739 aa12.27□□□□□ -0.45
SDC1-204ENST00000429035 CAPN7Q9Y6W3 813 aa12.27□□□□□ -0.45
SDC1-204ENST00000429035 GSTA4O15217 222 aa12.26□□□□□ -0.45
SDC1-204ENST00000429035 SGCEO43556 437 aa12.26□□□□□ -0.45
SDC1-204ENST00000429035 NPPAP01160 153 aa12.26□□□□□ -0.45
SDC1-204ENST00000429035 IGHV2-70P01814 119 aa12.26□□□□□ -0.45
SDC1-204ENST00000429035 SCG5P05408 212 aa12.26□□□□□ -0.45
SDC1-204ENST00000429035 CD55P08174 381 aa12.26□□□□□ -0.45
SDC1-204ENST00000429035 COMPP49747 757 aaPredicted RBP12.26□□□□□ -0.45
SDC1-204ENST00000429035 UBA52P62987 128 aaKnown RBP12.26□□□□□ -0.45
SDC1-204ENST00000429035 SELENOWP63302 87 aa12.26□□□□□ -0.45
SDC1-204ENST00000429035 PSG7Q13046 419 aa12.26□□□□□ -0.45
SDC1-204ENST00000429035 AWAT1Q58HT5 328 aa12.26□□□□□ -0.45
SDC1-204ENST00000429035 FOXL2NBQ6ZUU3 175 aa12.26□□□□□ -0.45
SDC1-204ENST00000429035 FKBP9P1Q75LS8 142 aa12.26□□□□□ -0.45
SDC1-204ENST00000429035 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.26□□□□□ -0.45
SDC1-204ENST00000429035 OR5AS1Q8N127 324 aa12.26□□□□□ -0.45
SDC1-204ENST00000429035 KLHL36Q8N4N3 616 aa12.26□□□□□ -0.45
SDC1-204ENST00000429035 SIGLECL1Q8N7X8 197 aa12.26□□□□□ -0.45
SDC1-204ENST00000429035 ZDHHC22Q8N966 263 aa12.26□□□□□ -0.45
SDC1-204ENST00000429035 Q96M85 177 aa12.26□□□□□ -0.45
SDC1-204ENST00000429035 SAR1AQ9NR31 198 aa12.26□□□□□ -0.45
SDC1-204ENST00000429035 MAN2C1Q9NTJ4 1040 aa12.26□□□□□ -0.45
SDC1-204ENST00000429035 PLEK2Q9NYT0 353 aa12.26□□□□□ -0.45
SDC1-204ENST00000429035 GRHPRQ9UBQ7 328 aa12.26□□□□□ -0.45
SDC1-204ENST00000429035 OPN4Q9UHM6 478 aa12.26□□□□□ -0.45
SDC1-204ENST00000429035 SNX13Q9Y5W8 968 aa12.26□□□□□ -0.45
SDC1-204ENST00000429035 TEX13CA0A0J9YWL9 993 aa12.25□□□□□ -0.45
SDC1-204ENST00000429035 ADH4P08319 380 aa12.25□□□□□ -0.45
SDC1-204ENST00000429035 TNFRSF1AP19438 455 aa12.25□□□□□ -0.45
SDC1-204ENST00000429035 ZFP36P26651 326 aaKnown RBP12.25□□□□□ -0.45
SDC1-204ENST00000429035 SEC61A1P61619 476 aaKnown RBP12.25□□□□□ -0.45
SDC1-204ENST00000429035 BTG1P62324 171 aa12.25□□□□□ -0.45
SDC1-204ENST00000429035 PRKCDQ05655 676 aa12.25□□□□□ -0.45
SDC1-204ENST00000429035 KRR1Q13601 381 aaKnown RBP12.25□□□□□ -0.45
SDC1-204ENST00000429035 IFI44LQ53G44 452 aa12.25□□□□□ -0.45
SDC1-204ENST00000429035 MESTQ5EB52 335 aa12.25□□□□□ -0.45
SDC1-204ENST00000429035 TBPL2Q6SJ96 375 aa12.25□□□□□ -0.45
SDC1-204ENST00000429035 RRM2BQ7LG56 351 aa12.25□□□□□ -0.45
SDC1-204ENST00000429035 ACOT11Q8WXI4 607 aaPredicted RBP12.25□□□□□ -0.45
SDC1-204ENST00000429035 SLC7A6Q92536 515 aa12.25□□□□□ -0.45
SDC1-204ENST00000429035 RASD2Q96D21 266 aa12.25□□□□□ -0.45
SDC1-204ENST00000429035 CMBLQ96DG6 245 aa12.25□□□□□ -0.45
SDC1-204ENST00000429035 HSH2DQ96JZ2 352 aa12.25□□□□□ -0.45
SDC1-204ENST00000429035 MRI1Q9BV20 369 aa12.25□□□□□ -0.45
SDC1-204ENST00000429035 MMP26Q9NRE1 261 aa12.25□□□□□ -0.45
SDC1-204ENST00000429035 PTTG3PQ9NZH4 202 aa12.25□□□□□ -0.45
SDC1-204ENST00000429035 ARMCX1Q9P291 453 aa12.25□□□□□ -0.45
SDC1-204ENST00000429035 EGFL7Q9UHF1 273 aa12.25□□□□□ -0.45
SDC1-204ENST00000429035 DOCK11Q5JSL3 2073 aa12.25□□□□□ -0.45
SDC1-204ENST00000429035 HTR3EA5X5Y0 456 aa12.24□□□□□ -0.45
SDC1-204ENST00000429035 CXCR6O00574 342 aa12.24□□□□□ -0.45
SDC1-204ENST00000429035 CDC42EP2O14613 210 aa12.24□□□□□ -0.45
SDC1-204ENST00000429035 CD14P08571 375 aa12.24□□□□□ -0.45
SDC1-204ENST00000429035 CTLA4P16410 223 aa12.24□□□□□ -0.45
SDC1-204ENST00000429035 CENPAP49450 140 aa12.24□□□□□ -0.45
SDC1-204ENST00000429035 ERFP50548 548 aa12.24□□□□□ -0.45
SDC1-204ENST00000429035 ESCO2Q56NI9 601 aa12.24□□□□□ -0.45
SDC1-204ENST00000429035 Q6ZR03 302 aa12.24□□□□□ -0.45
SDC1-204ENST00000429035 VASH1Q7L8A9 365 aaPredicted RBP12.24□□□□□ -0.45
SDC1-204ENST00000429035 ARPINQ7Z6K5 226 aa12.24□□□□□ -0.45
SDC1-204ENST00000429035 SYT9Q86SS6 491 aa12.24□□□□□ -0.45
SDC1-204ENST00000429035 ATG16L2Q8NAA4 619 aa12.24□□□□□ -0.45
SDC1-204ENST00000429035 SGMS2Q8NHU3 365 aa12.24□□□□□ -0.45
SDC1-204ENST00000429035 POP5Q969H6 163 aaKnown RBP12.24□□□□□ -0.45
SDC1-204ENST00000429035 FAM162AQ96A26 154 aa12.24□□□□□ -0.45
SDC1-204ENST00000429035 FAM46AQ96IP4 442 aaKnown RBP12.24□□□□□ -0.45
SDC1-204ENST00000429035 OR2V2Q96R30 315 aa12.24□□□□□ -0.45
SDC1-204ENST00000429035 C1QTNF5Q9BXJ0 243 aa12.24□□□□□ -0.45
SDC1-204ENST00000429035 VIPAS39Q9H9C1 493 aa12.24□□□□□ -0.45
SDC1-204ENST00000429035 NTN4Q9HB63 628 aa12.24□□□□□ -0.45
SDC1-204ENST00000429035 PATZ1Q9HBE1 687 aaKnown RBP12.24□□□□□ -0.45
SDC1-204ENST00000429035 CMTM6Q9NX76 183 aa12.24□□□□□ -0.45
SDC1-204ENST00000429035 OR5V1Q9UGF6 321 aa12.24□□□□□ -0.45
SDC1-204ENST00000429035 PPP1R3CQ9UQK1 317 aa12.24□□□□□ -0.45
SDC1-204ENST00000429035 PCDHGB1Q9Y5G3 927 aa12.24□□□□□ -0.45
SDC1-204ENST00000429035 AUP1Q9Y679 476 aa12.24□□□□□ -0.45
SDC1-204ENST00000429035 TENM1Q9UKZ4 2725 aa12.24□□□□□ -0.45
SDC1-204ENST00000429035 IGHV3OR16-10A0A075B7F0 116 aa12.23□□□□□ -0.45
SDC1-204ENST00000429035 A0A087WUU8 490 aa12.23□□□□□ -0.45
SDC1-204ENST00000429035 IGHV3-64DA0A0J9YX35 117 aa12.23□□□□□ -0.45
SDC1-204ENST00000429035 SOCS2O14508 198 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms