RNA–Protein interactions for RNA: ENST00000417088.2

RPS28-201, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 334 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-201ENST00000417088 OR2T12Q8NG77 320 aa12.5□□□□□ -0.41
RPS28-201ENST00000417088 NTN4Q9HB63 628 aa12.5□□□□□ -0.41
RPS28-201ENST00000417088 EMC7Q9NPA0 242 aa12.5□□□□□ -0.41
RPS28-201ENST00000417088 SAR1AQ9NR31 198 aa12.5□□□□□ -0.41
RPS28-201ENST00000417088 DDX28Q9NUL7 540 aaKnown RBP12.5□□□□□ -0.41
RPS28-201ENST00000417088 TBCCD1Q9NVR7 557 aa12.5□□□□□ -0.41
RPS28-201ENST00000417088 RHCGQ9UBD6 479 aa12.5□□□□□ -0.41
RPS28-201ENST00000417088 EGFL7Q9UHF1 273 aa12.5□□□□□ -0.41
RPS28-201ENST00000417088 PURGQ9UJV8 347 aaKnown RBP12.5□□□□□ -0.41
RPS28-201ENST00000417088 NDRG4Q9ULP0 352 aaKnown RBP12.5□□□□□ -0.41
RPS28-201ENST00000417088 PPIAL4AQ9Y536 164 aa12.5□□□□□ -0.41
RPS28-201ENST00000417088 SNX13Q9Y5W8 968 aa12.5□□□□□ -0.41
RPS28-201ENST00000417088 LOC100653049A0A140TA62 436 aa12.49□□□□□ -0.41
RPS28-201ENST00000417088 EFCAB9A8MZ26 197 aa12.49□□□□□ -0.41
RPS28-201ENST00000417088 TRAPPC2LH3BP13 241 aa12.49□□□□□ -0.41
RPS28-201ENST00000417088 H7C1C5 153 aa12.49□□□□□ -0.41
RPS28-201ENST00000417088 J3KTA2 159 aa12.49□□□□□ -0.41
RPS28-201ENST00000417088 FFAR1O14842 300 aa12.49□□□□□ -0.41
RPS28-201ENST00000417088 KRT34O76011 436 aa12.49□□□□□ -0.41
RPS28-201ENST00000417088 GSTM3P21266 225 aa12.49□□□□□ -0.41
RPS28-201ENST00000417088 KITLGP21583 273 aa12.49□□□□□ -0.41
RPS28-201ENST00000417088 LCN6P62502 163 aa12.49□□□□□ -0.41
RPS28-201ENST00000417088 ANKDD1AQ495B1 522 aa12.49□□□□□ -0.41
RPS28-201ENST00000417088 LRRC28Q86X40 367 aaPredicted RBP12.49□□□□□ -0.41
RPS28-201ENST00000417088 OFCC1Q8IZS5 231 aa12.49□□□□□ -0.41
RPS28-201ENST00000417088 NPEPL1Q8NDH3 523 aa12.49□□□□□ -0.41
RPS28-201ENST00000417088 OR13C2Q8NGS9 318 aa12.49□□□□□ -0.41
RPS28-201ENST00000417088 POP5Q969H6 163 aaKnown RBP12.49□□□□□ -0.41
RPS28-201ENST00000417088 CMBLQ96DG6 245 aa12.49□□□□□ -0.41
RPS28-201ENST00000417088 SAMD8Q96LT4 415 aa12.49□□□□□ -0.41
RPS28-201ENST00000417088 WACQ9BTA9 647 aa12.49□□□□□ -0.41
RPS28-201ENST00000417088 FNDC11Q9BVV2 318 aa12.49□□□□□ -0.41
RPS28-201ENST00000417088 PATZ1Q9HBE1 687 aaKnown RBP12.49□□□□□ -0.41
RPS28-201ENST00000417088 MRGBPQ9NV56 204 aa12.49□□□□□ -0.41
RPS28-201ENST00000417088 GID8Q9NWU2 228 aa12.49□□□□□ -0.41
RPS28-201ENST00000417088 POLR3KQ9Y2Y1 108 aaPredicted RBP12.49□□□□□ -0.41
RPS28-201ENST00000417088 STARD10Q9Y365 291 aa12.49□□□□□ -0.41
RPS28-201ENST00000417088 A0A087WUU8 490 aa12.48□□□□□ -0.41
RPS28-201ENST00000417088 ELOVL7A1L3X0 281 aa12.48□□□□□ -0.41
RPS28-201ENST00000417088 ZNF12P17014 697 aa12.48□□□□□ -0.41
RPS28-201ENST00000417088 ZNF26P17031 533 aaPredicted RBP12.48□□□□□ -0.41
RPS28-201ENST00000417088 TUBG1P23258 451 aa12.48□□□□□ -0.41
RPS28-201ENST00000417088 TNFSF4P23510 183 aa12.48□□□□□ -0.41
RPS28-201ENST00000417088 HTR5AP47898 357 aa12.48□□□□□ -0.41
RPS28-201ENST00000417088 SLC6A9P48067 706 aa12.48□□□□□ -0.41
RPS28-201ENST00000417088 SEC61A1P61619 476 aaKnown RBP12.48□□□□□ -0.41
RPS28-201ENST00000417088 SCRN3Q0VDG4 424 aa12.48□□□□□ -0.41
RPS28-201ENST00000417088 ZNF154Q13106 437 aa12.48□□□□□ -0.41
RPS28-201ENST00000417088 TRAM2Q15035 370 aa12.48□□□□□ -0.41
RPS28-201ENST00000417088 MAPRE2Q15555 327 aa12.48□□□□□ -0.41
RPS28-201ENST00000417088 TMEM155Q4W5P6 130 aa12.48□□□□□ -0.41
RPS28-201ENST00000417088 KLF17Q5JT82 389 aaPredicted RBP12.48□□□□□ -0.41
RPS28-201ENST00000417088 VASH1Q7L8A9 365 aaPredicted RBP12.48□□□□□ -0.41
RPS28-201ENST00000417088 VTCN1Q7Z7D3 282 aa12.48□□□□□ -0.41
RPS28-201ENST00000417088 SPICQ8N5J4 248 aa12.48□□□□□ -0.41
RPS28-201ENST00000417088 SIGLECL1Q8N7X8 197 aa12.48□□□□□ -0.41
RPS28-201ENST00000417088 PCYOX1LQ8NBM8 494 aa12.48□□□□□ -0.41
RPS28-201ENST00000417088 OR2Z1Q8NG97 314 aa12.48□□□□□ -0.41
RPS28-201ENST00000417088 ACOT11Q8WXI4 607 aaPredicted RBP12.48□□□□□ -0.41
RPS28-201ENST00000417088 HAVCR1Q96D42 359 aa12.48□□□□□ -0.41
RPS28-201ENST00000417088 Q96M85 177 aa12.48□□□□□ -0.41
RPS28-201ENST00000417088 ZNF747Q9BV97 191 aa12.48□□□□□ -0.41
RPS28-201ENST00000417088 TUBG2Q9NRH3 451 aa12.48□□□□□ -0.41
RPS28-201ENST00000417088 GMPR2Q9P2T1 348 aaKnown RBP12.48□□□□□ -0.41
RPS28-201ENST00000417088 ZNF69Q9UC07 566 aa12.48□□□□□ -0.41
RPS28-201ENST00000417088 NUP50Q9UKX7 468 aa12.48□□□□□ -0.41
RPS28-201ENST00000417088 ADAM18Q9Y3Q7 739 aa12.48□□□□□ -0.41
RPS28-201ENST00000417088 AUP1Q9Y679 476 aa12.48□□□□□ -0.41
RPS28-201ENST00000417088 MEGF8Q7Z7M0 2845 aa12.48□□□□□ -0.41
RPS28-201ENST00000417088 F5H0A9 414 aaPredicted RBP12.47□□□□□ -0.41
RPS28-201ENST00000417088 CDC42EP2O14613 210 aa12.47□□□□□ -0.41
RPS28-201ENST00000417088 SGCEO43556 437 aa12.47□□□□□ -0.41
RPS28-201ENST00000417088 DOK2O60496 412 aa12.47□□□□□ -0.41
RPS28-201ENST00000417088 IFNW1P05000 195 aa12.47□□□□□ -0.41
RPS28-201ENST00000417088 HKR1P10072 659 aa12.47□□□□□ -0.41
RPS28-201ENST00000417088 TNFRSF1AP19438 455 aa12.47□□□□□ -0.41
RPS28-201ENST00000417088 RPL4P36578 427 aaKnown RBP12.47□□□□□ -0.41
RPS28-201ENST00000417088 SLC9A3P48764 834 aa12.47□□□□□ -0.41
RPS28-201ENST00000417088 ERFP50548 548 aa12.47□□□□□ -0.41
RPS28-201ENST00000417088 BTG1P62324 171 aa12.47□□□□□ -0.41
RPS28-201ENST00000417088 SF3A3Q12874 501 aaKnown RBP eCLIP12.47□□□□□ -0.41
RPS28-201ENST00000417088 FOXL1Q12952 345 aa12.47□□□□□ -0.41
RPS28-201ENST00000417088 ZMYND11Q15326 602 aa12.47□□□□□ -0.41
RPS28-201ENST00000417088 MESTQ5EB52 335 aa12.47□□□□□ -0.41
RPS28-201ENST00000417088 ARMCX4Q5H9R4 360 aa12.47□□□□□ -0.41
RPS28-201ENST00000417088 TBPL2Q6SJ96 375 aa12.47□□□□□ -0.41
RPS28-201ENST00000417088 RBMS3Q6XE24 437 aaKnown RBP12.47□□□□□ -0.41
RPS28-201ENST00000417088 DOK3Q7L591 496 aa12.47□□□□□ -0.41
RPS28-201ENST00000417088 HDXQ7Z353 690 aa12.47□□□□□ -0.41
RPS28-201ENST00000417088 RNF113BQ8IZP6 322 aaKnown RBP12.47□□□□□ -0.41
RPS28-201ENST00000417088 BCL6BQ8N143 479 aaPredicted RBP12.47□□□□□ -0.41
RPS28-201ENST00000417088 KLHL36Q8N4N3 616 aa12.47□□□□□ -0.41
RPS28-201ENST00000417088 FAM156AQ8NDB6 213 aa12.47□□□□□ -0.41
RPS28-201ENST00000417088 ITLN1Q8WWA0 313 aa12.47□□□□□ -0.41
RPS28-201ENST00000417088 LZICQ8WZA0 190 aa12.47□□□□□ -0.41
RPS28-201ENST00000417088 SIGLEC11Q96RL6 698 aa12.47□□□□□ -0.41
RPS28-201ENST00000417088 VIPAS39Q9H9C1 493 aa12.47□□□□□ -0.41
RPS28-201ENST00000417088 CMTM6Q9NX76 183 aa12.47□□□□□ -0.41
RPS28-201ENST00000417088 PLEK2Q9NYT0 353 aa12.47□□□□□ -0.41
RPS28-201ENST00000417088 GRHPRQ9UBQ7 328 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms