RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 PSMB11A5LHX3 300 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 A8MX80 341 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 C11orf98E9PRG8 122 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 PLPP3O14495 311 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 IGHV4-59P01825 116 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 SERPINA5P05154 406 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 OCM2P0CE71 109 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 IGHV4-38-2P0DP08 117 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 SDC1P18827 310 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 IL12AP29459 219 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 RFC3P40938 356 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 PTGDSP41222 190 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 HCAR3P49019 387 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 CDK9P50750 372 aaKnown RBP3.39□□□□□ -1.87
HMGB1-204ENST00000399489 RPL36AP83881 106 aaKnown RBP3.39□□□□□ -1.87
HMGB1-204ENST00000399489 VLDLRP98155 873 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 TAL2Q16559 108 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 TMEM249Q2WGJ8 235 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 AKIRIN2Q53H80 203 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 MTUS2Q5JR59 1369 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 TEX30Q5JUR7 227 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 BRMS1LQ5PSV4 323 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 RBM48Q5RL73 367 aaKnown RBP3.39□□□□□ -1.87
HMGB1-204ENST00000399489 IDNKQ5T6J7 187 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 RESP18Q5W5W9 173 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 USP43Q70EL4 1123 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 PGAM4Q8N0Y7 254 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 ZFP82Q8N141 532 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 ACBD4Q8NC06 268 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 OR2L5Q8NG80 312 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 OR5B17Q8NGF7 314 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 OR6K6Q8NGW6 343 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 ACTL9Q8TC94 416 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 IL1F10Q8WWZ1 152 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 IFT81Q8WYA0 676 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 CTTNBP2Q8WZ74 1663 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 S100PBPQ96BU1 408 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 WFIKKN1Q96NZ8 548 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 OR8B4Q96RC9 309 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 MCCC1Q96RQ3 725 aaPredicted RBP3.39□□□□□ -1.87
HMGB1-204ENST00000399489 NKX3-1Q99801 234 aaPredicted RBP3.39□□□□□ -1.87
HMGB1-204ENST00000399489 PRRT1Q99946 306 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 DHRS9Q9BPW9 319 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 COPS4Q9BT78 406 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 PORCNQ9H237 461 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 TMEM38AQ9H6F2 299 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 FBXL3Q9UKT7 428 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 RPL36Q9Y3U8 105 aaKnown RBP3.39□□□□□ -1.87
HMGB1-204ENST00000399489 POLR3HQ9Y535 204 aaPredicted RBP3.39□□□□□ -1.87
HMGB1-204ENST00000399489 ADGRL3Q9HAR2 1447 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 IGLV5-37A0A075B6J1 123 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 A0A1W2PQL4 384 aaPredicted RBP3.39□□□□□ -1.87
HMGB1-204ENST00000399489 OR2AT4A6NND4 320 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 MIF4GDA9UHW6 222 aaKnown RBP3.39□□□□□ -1.87
HMGB1-204ENST00000399489 CDC7O00311 574 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 CCL21O00585 134 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 TNFSF12O43508 249 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 PSMG1O95456 288 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 CATP04040 527 aaKnown RBP3.39□□□□□ -1.87
HMGB1-204ENST00000399489 C2P06681 752 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 HSPD1P10809 573 aaKnown RBP3.39□□□□□ -1.87
HMGB1-204ENST00000399489 PLA2G2AP14555 144 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 MYOGP15173 224 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 SERPINA2P20848 420 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 CALML3P27482 149 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 ARR3P36575 388 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 TFPI2P48307 235 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 GSSP48637 474 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 SSR4P51571 173 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 DLG1Q12959 904 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 ZNF154Q13106 437 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 GGTLC2Q14390 218 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 ZNHIT3Q15649 155 aaPredicted RBP3.39□□□□□ -1.87
HMGB1-204ENST00000399489 TAB1Q15750 504 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 CHRFAM7AQ494W8 412 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 SDHAF4Q5VUM1 108 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 C1orf146Q5VVC0 180 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 ANKRD26P1Q6NSI1 321 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 FRRS1Q6ZNA5 592 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 RBM23Q86U06 439 aaKnown RBP3.39□□□□□ -1.87
HMGB1-204ENST00000399489 LHFPL3Q86UP9 236 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 EID2Q8N6I1 236 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 NATD1Q8N6N6 113 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 PRELID2Q8N945 189 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 LFNGQ8NES3 379 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 OR2D3Q8NGH3 330 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 OR52N1Q8NH53 320 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 ZNF502Q8TBZ5 544 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 MCOLN3Q8TDD5 553 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 HPSE2Q8WWQ2 592 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 CMTM5Q96DZ9 223 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 ZNF385AQ96PM9 386 aaKnown RBP3.39□□□□□ -1.87
HMGB1-204ENST00000399489 PPDPFQ9H3Y8 114 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 RNF41Q9H4P4 317 aaPredicted RBP3.39□□□□□ -1.87
HMGB1-204ENST00000399489 ZNF385DQ9H6B1 395 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 NT5DC2Q9H857 520 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 PLGRKTQ9HBL7 147 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 EHFQ9NZC4 300 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 SEC14L4Q9UDX3 406 aa3.39□□□□□ -1.87
HMGB1-204ENST00000399489 LGALS13Q9UHV8 139 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms