RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 BMP5P22003 454 aa12.49□□□□□ -0.41
SKA1-202ENST00000398452 MAP2K4P45985 399 aa12.49□□□□□ -0.41
SKA1-202ENST00000398452 RPL5P46777 297 aaKnown RBP12.49□□□□□ -0.41
SKA1-202ENST00000398452 ETV1P50549 477 aa12.49□□□□□ -0.41
SKA1-202ENST00000398452 GBX2P52951 348 aaPredicted RBP12.49□□□□□ -0.41
SKA1-202ENST00000398452 UBE2NP61088 152 aaKnown RBP12.49□□□□□ -0.41
SKA1-202ENST00000398452 EMX1Q04741 257 aaPredicted RBP12.49□□□□□ -0.41
SKA1-202ENST00000398452 MRPL28Q13084 256 aaKnown RBP12.49□□□□□ -0.41
SKA1-202ENST00000398452 P2RY6Q15077 328 aa12.49□□□□□ -0.41
SKA1-202ENST00000398452 OR7E24Q6IFN5 339 aa12.49□□□□□ -0.41
SKA1-202ENST00000398452 TMEM53Q6P2H8 277 aa12.49□□□□□ -0.41
SKA1-202ENST00000398452 ANKRD16Q6P6B7 361 aa12.49□□□□□ -0.41
SKA1-202ENST00000398452 DCXRQ7Z4W1 244 aa12.49□□□□□ -0.41
SKA1-202ENST00000398452 NANOGP1Q8N7R0 232 aa12.49□□□□□ -0.41
SKA1-202ENST00000398452 YIPF7Q8N8F6 280 aa12.49□□□□□ -0.41
SKA1-202ENST00000398452 OR52N1Q8NH53 320 aa12.49□□□□□ -0.41
SKA1-202ENST00000398452 ACOT13Q9NPJ3 140 aa12.49□□□□□ -0.41
SKA1-202ENST00000398452 TRIM36Q9NQ86 728 aa12.49□□□□□ -0.41
SKA1-202ENST00000398452 CENPMQ9NSP4 180 aa12.49□□□□□ -0.41
SKA1-202ENST00000398452 ASH2LQ9UBL3 628 aa12.49□□□□□ -0.41
SKA1-202ENST00000398452 GNG8Q9UK08 70 aa12.49□□□□□ -0.41
SKA1-202ENST00000398452 SPTAN1Q13813 2472 aaKnown RBP12.49□□□□□ -0.41
SKA1-202ENST00000398452 A0A0G2JNJ9 132 aa12.48□□□□□ -0.41
SKA1-202ENST00000398452 HTR1AP08908 422 aa12.48□□□□□ -0.41
SKA1-202ENST00000398452 H2BFMP0C1H6 154 aa12.48□□□□□ -0.41
SKA1-202ENST00000398452 SMIM18P0DKX4 95 aa12.48□□□□□ -0.41
SKA1-202ENST00000398452 ALOX5APP20292 161 aa12.48□□□□□ -0.41
SKA1-202ENST00000398452 IL32P24001 234 aa12.48□□□□□ -0.41
SKA1-202ENST00000398452 HSD11B1P28845 292 aa12.48□□□□□ -0.41
SKA1-202ENST00000398452 HCCSP53701 268 aa12.48□□□□□ -0.41
SKA1-202ENST00000398452 TAS2R43P59537 309 aa12.48□□□□□ -0.41
SKA1-202ENST00000398452 PLP2Q04941 152 aa12.48□□□□□ -0.41
SKA1-202ENST00000398452 SPHARQ15513 63 aa12.48□□□□□ -0.41
SKA1-202ENST00000398452 GPR141Q7Z602 305 aa12.48□□□□□ -0.41
SKA1-202ENST00000398452 SYT9Q86SS6 491 aa12.48□□□□□ -0.41
SKA1-202ENST00000398452 LUZP2Q86TE4 346 aa12.48□□□□□ -0.41
SKA1-202ENST00000398452 EGFL6Q8IUX8 553 aa12.48□□□□□ -0.41
SKA1-202ENST00000398452 CCDC36Q8IYA8 594 aa12.48□□□□□ -0.41
SKA1-202ENST00000398452 ALDH16A1Q8IZ83 802 aa12.48□□□□□ -0.41
SKA1-202ENST00000398452 SYS1Q8N2H4 156 aa12.48□□□□□ -0.41
SKA1-202ENST00000398452 ZNF610Q8N9Z0 462 aa12.48□□□□□ -0.41
SKA1-202ENST00000398452 OR52N5Q8NH56 324 aa12.48□□□□□ -0.41
SKA1-202ENST00000398452 SMAP2Q8WU79 429 aaPredicted RBP12.48□□□□□ -0.41
SKA1-202ENST00000398452 ASB5Q8WWX0 329 aa12.48□□□□□ -0.41
SKA1-202ENST00000398452 ABHD6Q9BV23 337 aa12.48□□□□□ -0.41
SKA1-202ENST00000398452 ZNF416Q9BWM5 594 aa12.48□□□□□ -0.41
SKA1-202ENST00000398452 TTTY10Q9BZA0 68 aa12.48□□□□□ -0.41
SKA1-202ENST00000398452 OPN3Q9H1Y3 402 aaPredicted RBP12.48□□□□□ -0.41
SKA1-202ENST00000398452 Q9UFV3 132 aa12.48□□□□□ -0.41
SKA1-202ENST00000398452 CLEC2DQ9UHP7 191 aa12.48□□□□□ -0.41
SKA1-202ENST00000398452 CYB5R1Q9UHQ9 305 aa12.48□□□□□ -0.41
SKA1-202ENST00000398452 GDF2Q9UK05 429 aaPredicted RBP12.48□□□□□ -0.41
SKA1-202ENST00000398452 TIMM10BQ9Y5J6 103 aa12.48□□□□□ -0.41
SKA1-202ENST00000398452 ALPK2Q86TB3 2170 aa12.47□□□□□ -0.41
SKA1-202ENST00000398452 A0A096LPE4 126 aa12.47□□□□□ -0.41
SKA1-202ENST00000398452 A0A1W2PPZ6 126 aa12.47□□□□□ -0.41
SKA1-202ENST00000398452 METTL15A6NJ78 407 aa12.47□□□□□ -0.41
SKA1-202ENST00000398452 ZNF878C9JN71 531 aa12.47□□□□□ -0.41
SKA1-202ENST00000398452 J3QRE1 110 aa12.47□□□□□ -0.41
SKA1-202ENST00000398452 ZNF254O75437 659 aa12.47□□□□□ -0.41
SKA1-202ENST00000398452 SULT1C4O75897 302 aa12.47□□□□□ -0.41
SKA1-202ENST00000398452 UBL3O95164 117 aa12.47□□□□□ -0.41
SKA1-202ENST00000398452 LIMS3P0CW19 117 aa12.47□□□□□ -0.41
SKA1-202ENST00000398452 LIMS4P0CW20 117 aa12.47□□□□□ -0.41
SKA1-202ENST00000398452 EDNRAP25101 427 aa12.47□□□□□ -0.41
SKA1-202ENST00000398452 TTKP33981 857 aa12.47□□□□□ -0.41
SKA1-202ENST00000398452 ARR3P36575 388 aa12.47□□□□□ -0.41
SKA1-202ENST00000398452 RPS27P42677 84 aaKnown RBP12.47□□□□□ -0.41
SKA1-202ENST00000398452 RIDAP52758 137 aaKnown RBP12.47□□□□□ -0.41
SKA1-202ENST00000398452 ZNF85Q03923 595 aa12.47□□□□□ -0.41
SKA1-202ENST00000398452 MRPL49Q13405 166 aaKnown RBP12.47□□□□□ -0.41
SKA1-202ENST00000398452 IRF3Q14653 427 aa12.47□□□□□ -0.41
SKA1-202ENST00000398452 TIGD6Q17RP2 521 aa12.47□□□□□ -0.41
SKA1-202ENST00000398452 TP53I3Q53FA7 332 aa12.47□□□□□ -0.41
SKA1-202ENST00000398452 OTPQ5XKR4 325 aa12.47□□□□□ -0.41
SKA1-202ENST00000398452 HIST2H2BCQ6DN03 193 aa12.47□□□□□ -0.41
SKA1-202ENST00000398452 LINGO2Q7L985 606 aa12.47□□□□□ -0.41
SKA1-202ENST00000398452 MRGPRGQ86SM5 289 aa12.47□□□□□ -0.41
SKA1-202ENST00000398452 FJX1Q86VR8 437 aa12.47□□□□□ -0.41
SKA1-202ENST00000398452 NAXEQ8NCW5 288 aa12.47□□□□□ -0.41
SKA1-202ENST00000398452 C1orf162Q8NEQ5 155 aaPredicted RBP12.47□□□□□ -0.41
SKA1-202ENST00000398452 OR1K1Q8NGR3 316 aa12.47□□□□□ -0.41
SKA1-202ENST00000398452 PRR7Q8TB68 274 aa12.47□□□□□ -0.41
SKA1-202ENST00000398452 SPRYD4Q8WW59 207 aaPredicted RBP12.47□□□□□ -0.41
SKA1-202ENST00000398452 GATAD2BQ8WXI9 593 aa12.47□□□□□ -0.41
SKA1-202ENST00000398452 SLAMF6Q96DU3 332 aa12.47□□□□□ -0.41
SKA1-202ENST00000398452 ZNF837Q96EG3 531 aaPredicted RBP12.47□□□□□ -0.41
SKA1-202ENST00000398452 C4orf36Q96KX1 117 aa12.47□□□□□ -0.41
SKA1-202ENST00000398452 SIGLEC11Q96RL6 698 aa12.47□□□□□ -0.41
SKA1-202ENST00000398452 DMRTA2Q96SC8 542 aa12.47□□□□□ -0.41
SKA1-202ENST00000398452 SH3GL3Q99963 347 aa12.47□□□□□ -0.41
SKA1-202ENST00000398452 HDHD5Q9BXW7 423 aa12.47□□□□□ -0.41
SKA1-202ENST00000398452 NIPAL2Q9H841 368 aa12.47□□□□□ -0.41
SKA1-202ENST00000398452 PLEK2Q9NYT0 353 aa12.47□□□□□ -0.41
SKA1-202ENST00000398452 COPS3Q9UNS2 423 aa12.47□□□□□ -0.41
SKA1-202ENST00000398452 USP9XQ93008 2570 aaPredicted RBP12.47□□□□□ -0.41
SKA1-202ENST00000398452 SPENQ96T58 3664 aaKnown RBP12.47□□□□□ -0.41
SKA1-202ENST00000398452 TRIM64CA6NLI5 447 aa12.46□□□□□ -0.41
SKA1-202ENST00000398452 SGCEO43556 437 aa12.46□□□□□ -0.41
SKA1-202ENST00000398452 NOL3O60936 208 aaKnown RBP12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms