RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 B3GAT2Q9NPZ5 323 aa8.1□□□□□ -1.11
USP4-202ENST00000351842 MRPL22Q9NWU5 206 aaKnown RBP8.1□□□□□ -1.11
USP4-202ENST00000351842 FBXL3Q9UKT7 428 aa8.1□□□□□ -1.11
USP4-202ENST00000351842 BAIAP2Q9UQB8 552 aa8.1□□□□□ -1.11
USP4-202ENST00000351842 TPRKBQ9Y3C4 175 aa8.1□□□□□ -1.11
USP4-202ENST00000351842 SLC22A31A6NKX4 558 aa8.09□□□□□ -1.11
USP4-202ENST00000351842 SNTNA6NMZ2 147 aa8.09□□□□□ -1.11
USP4-202ENST00000351842 DVL2O14641 736 aa8.09□□□□□ -1.11
USP4-202ENST00000351842 RGS10O43665 173 aa8.09□□□□□ -1.11
USP4-202ENST00000351842 ZNF432O94892 652 aa8.09□□□□□ -1.11
USP4-202ENST00000351842 MAGEB1P43366 347 aa8.09□□□□□ -1.11
USP4-202ENST00000351842 SPATA46Q5T0L3 261 aa8.09□□□□□ -1.11
USP4-202ENST00000351842 DNM1P34Q6PK57 102 aa8.09□□□□□ -1.11
USP4-202ENST00000351842 KLBQ86Z14 1044 aa8.09□□□□□ -1.11
USP4-202ENST00000351842 SLC35F2Q8IXU6 374 aa8.09□□□□□ -1.11
USP4-202ENST00000351842 YIPF7Q8N8F6 280 aa8.09□□□□□ -1.11
USP4-202ENST00000351842 IPCEF1Q8WWN9 437 aaPredicted RBP8.09□□□□□ -1.11
USP4-202ENST00000351842 FZR1Q9UM11 496 aa8.09□□□□□ -1.11
USP4-202ENST00000351842 ARHGAP21Q5T5U3 1957 aa8.09□□□□□ -1.11
USP4-202ENST00000351842 PTHP01270 115 aa8.09□□□□□ -1.11
USP4-202ENST00000351842 SBK2P0C263 348 aa8.09□□□□□ -1.11
USP4-202ENST00000351842 ZNF32P17041 273 aa8.09□□□□□ -1.11
USP4-202ENST00000351842 APEX1P27695 318 aaKnown RBP8.09□□□□□ -1.11
USP4-202ENST00000351842 ZNF83P51522 516 aa8.09□□□□□ -1.11
USP4-202ENST00000351842 UBE2NP61088 152 aaKnown RBP8.09□□□□□ -1.11
USP4-202ENST00000351842 SLC3A1Q07837 685 aa8.09□□□□□ -1.11
USP4-202ENST00000351842 ZP4Q12836 540 aa8.09□□□□□ -1.11
USP4-202ENST00000351842 IL18R1Q13478 541 aa8.09□□□□□ -1.11
USP4-202ENST00000351842 THEM4Q5T1C6 240 aa8.09□□□□□ -1.11
USP4-202ENST00000351842 FBXW9Q5XUX1 488 aa8.09□□□□□ -1.11
USP4-202ENST00000351842 CFAP77Q6ZQR2 320 aa8.09□□□□□ -1.11
USP4-202ENST00000351842 KRT77Q7Z794 578 aa8.09□□□□□ -1.11
USP4-202ENST00000351842 NAA40Q86UY6 237 aa8.09□□□□□ -1.11
USP4-202ENST00000351842 CLVS1Q8IUQ0 354 aaPredicted RBP8.09□□□□□ -1.11
USP4-202ENST00000351842 SKA3Q8IX90 412 aa8.09□□□□□ -1.11
USP4-202ENST00000351842 RDH10Q8IZV5 341 aa8.09□□□□□ -1.11
USP4-202ENST00000351842 LINC01560Q8TB33 94 aa8.09□□□□□ -1.11
USP4-202ENST00000351842 KISS1RQ969F8 398 aaPredicted RBP8.09□□□□□ -1.11
USP4-202ENST00000351842 C4orf36Q96KX1 117 aa8.09□□□□□ -1.11
USP4-202ENST00000351842 NKX3-1Q99801 234 aaPredicted RBP8.09□□□□□ -1.11
USP4-202ENST00000351842 SF3B5Q9BWJ5 86 aaKnown RBP8.09□□□□□ -1.11
USP4-202ENST00000351842 EXOSC4Q9NPD3 245 aaKnown RBP8.09□□□□□ -1.11
USP4-202ENST00000351842 ZNF503-AS2A6NEH8 195 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 ANKRD61A6NGH8 418 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 C1QL1O75973 258 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 GLCEO94923 617 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 FARS2O95363 451 aaKnown RBP8.08□□□□□ -1.12
USP4-202ENST00000351842 CELA3BP08861 270 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 FAM157BP0CG42 384 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 GABRB1P18505 474 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 IGHV1-2P23083 117 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 HTR1FP30939 366 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 HSF2Q03933 536 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 MOGQ16653 247 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 OR2A2Q6IF42 318 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 ZNF474Q6S9Z5 364 aaPredicted RBP8.08□□□□□ -1.12
USP4-202ENST00000351842 ARL9Q6T311 187 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 TFAP2EQ6VUC0 442 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 KCTD8Q6ZWB6 473 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 GID4Q8IVV7 300 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 ST6GALNAC3Q8NDV1 305 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 GPX7Q96SL4 187 aaPredicted RBP8.08□□□□□ -1.12
USP4-202ENST00000351842 MED18Q9BUE0 208 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 MRPL13Q9BYD1 178 aaKnown RBP8.08□□□□□ -1.12
USP4-202ENST00000351842 ADGRL4Q9HBW9 690 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 ACOXLQ9NUZ1 547 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 ERRFI1Q9UJM3 462 aaPredicted RBP8.08□□□□□ -1.12
USP4-202ENST00000351842 ZNF175Q9Y473 711 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 IGLV1-36A0A0B4J1U3 117 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 PRR32B1ATL7 298 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 MPZL2O60487 215 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 HTR5AP47898 357 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 LINC01590Q5TEZ4 76 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 ZNF322Q6U7Q0 402 aaPredicted RBP8.08□□□□□ -1.12
USP4-202ENST00000351842 C22orf34Q6ZV56 151 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 PIAS4Q8N2W9 510 aaPredicted RBP8.08□□□□□ -1.12
USP4-202ENST00000351842 ACBD7Q8N6N7 88 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 TRUB1Q8WWH5 349 aaKnown RBP8.08□□□□□ -1.12
USP4-202ENST00000351842 BORCS5Q969J3 196 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 ORAI1Q96D31 301 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 ALG8Q9BVK2 526 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 ERGIC3Q9Y282 383 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 TMA7Q9Y2S6 64 aaKnown RBP8.08□□□□□ -1.12
USP4-202ENST00000351842 MEMO1Q9Y316 297 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 CSPG4Q6UVK1 2322 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 HRNRQ86YZ3 2850 aaPredicted RBP8.08□□□□□ -1.12
USP4-202ENST00000351842 SVEP1Q4LDE5 3571 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 LOC100506127A0A0U1RQW1 187 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 CCDC182A6NF36 153 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 TBX1O43435 398 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 IDH3BO43837 385 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 ANXA2P07355 339 aaKnown RBP8.08□□□□□ -1.12
USP4-202ENST00000351842 ITGA5P08648 1049 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 HTR1AP08908 422 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 CA7P43166 264 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 DLX5P56178 289 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 SNRPGP62308 76 aaKnown RBP8.08□□□□□ -1.12
USP4-202ENST00000351842 RAB1AP62820 205 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 INSL4Q14641 139 aa8.08□□□□□ -1.12
USP4-202ENST00000351842 C20orf196Q8IYI0 205 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms