RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 RBP2P50120 134 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 GNMTQ14749 295 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 C3AR1Q16581 482 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 CLVS2Q5SYC1 327 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 FJX1Q86VR8 437 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 PIGTQ969N2 578 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 NOX4Q9NPH5 578 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 GPR173Q9NS66 373 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 FBXL2Q9UKC9 423 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 ASPDHA6ND91 283 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 PIPP12273 146 aaPredicted RBP9.12□□□□□ -0.95
USP54-201ENST00000339859 GLRA1P23415 457 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 ZNF93P35789 620 aaPredicted RBP9.12□□□□□ -0.95
USP54-201ENST00000339859 TOMM34Q15785 309 aaPredicted RBP9.12□□□□□ -0.95
USP54-201ENST00000339859 SCCPDHQ8NBX0 429 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 CASTOR1Q8WTX7 329 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 IL1F10Q8WWZ1 152 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 IL17BQ9UHF5 180 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 TBC1D24Q9ULP9 559 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 TO15178 435 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 LYZL6O75951 148 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 GSTT2P0CG29 244 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 STOMP27105 288 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 TAS2R46P59540 309 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 SEC61A1P61619 476 aaKnown RBP9.12□□□□□ -0.95
USP54-201ENST00000339859 CORO6Q6QEF8 472 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 COX15Q7KZN9 410 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 TMEM185AQ8NFB2 350 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 OCSTAMPQ9BR26 566 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 SIAEQ9HAT2 523 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 CYSLTR2Q9NS75 346 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 A0A1B0GVC2 190 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 SBK2P0C263 348 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 AKR1C2P52895 323 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 LIMK1P53667 647 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 MEF2DQ14814 521 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 ANKRD34AQ69YU3 496 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 ZNF679Q8IYX0 411 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 Q8N402 240 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 RAB40AQ8WXH6 277 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 ZNF681Q96N22 645 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 NKX3-1Q99801 234 aaPredicted RBP9.11□□□□□ -0.95
USP54-201ENST00000339859 C16orf97H3BN30 126 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 CT45A8P0DMV1 189 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 CT45A9P0DMV2 189 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 CRHBPP24387 322 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 ACTBL2Q562R1 376 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 CT45A2Q5DJT8 189 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 OR2G6Q5TZ20 316 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 OR4K15Q8NH41 348 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 OR51E1Q8TCB6 317 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 C22orf15Q8WYQ4 148 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 LIPT2A6NK58 231 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 NRASP01111 189 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 PRKACAP17612 351 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 SLC25A1P53007 311 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 TAS2R31P59538 309 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 FXYD4P59646 89 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 SKP2Q13309 424 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 ATP1A1-AS1Q5TC04 95 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 LSRQ86X29 649 aaPredicted RBP9.11□□□□□ -0.95
USP54-201ENST00000339859 CMTM4Q8IZR5 234 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 SPARTQ8N0X7 666 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 FAM26EQ8N5C1 309 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 OR6X1Q8NH79 312 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 GHSRQ92847 366 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 PBOV1Q9GZY1 135 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 AQP7P3A6NL99 342 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 ZAR1LA6NP61 321 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 CELA2AP08217 269 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 GUSBP08236 651 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 SMIM10L1P0DMW3 83 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 B3GLCTQ6Y288 498 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 PPP1R32Q7Z5V6 425 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 EGFL6Q8IUX8 553 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 ZNF615Q8N8J6 731 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 UTP4Q969X6 686 aaKnown RBP9.11□□□□□ -0.95
USP54-201ENST00000339859 SMIM10Q96HG1 83 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 CHIAQ9BZP6 476 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 SYNPO2LQ9H987 977 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 ZNF391Q9UJN7 358 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 KLK4Q9Y5K2 254 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 VWA8A3KMH1 1905 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 NTN3O00634 580 aaPredicted RBP9.11□□□□□ -0.95
USP54-201ENST00000339859 AMY2AP04746 511 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 CPT2P23786 658 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 CDK2P24941 298 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 CDAP32320 146 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 COL19A1Q14993 1142 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 CCDC92Q53HC0 331 aaPredicted RBP9.11□□□□□ -0.95
USP54-201ENST00000339859 TUSC5Q8IXB3 177 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 ZNF709Q8N972 641 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 MCHR2Q969V1 340 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 SELENOIQ9C0D9 397 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 TAS2R16Q9NYV7 291 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 GNG12Q9UBI6 72 aa9.11□□□□□ -0.95
USP54-201ENST00000339859 BHLHE40O14503 412 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 SLC2A1P11166 492 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 TMEM251Q8N6I4 163 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 AKR7LQ8NHP1 331 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 99.5 ms