RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 PRSS3P35030 304 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 PSMB10P40306 273 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 PDLIM4P50479 330 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 P2RX1P51575 399 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 MVDP53602 400 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 GGTA1PQ4G0N0 100 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 SLC22A6Q4U2R8 563 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 MPPE1Q53F39 396 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 ZNF322Q6U7Q0 402 aaPredicted RBP3.78□□□□□ -1.8
NEDD4-201ENST00000338963 GLT6D1Q7Z4J2 308 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 CISD2Q8N5K1 135 aaKnown RBP3.78□□□□□ -1.8
NEDD4-201ENST00000338963 TMEM229BQ8NBD8 167 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 OR52L2PQ8NGH6 319 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 OR4D5Q8NGN0 318 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 BCL2L2Q92843 193 aaPredicted RBP3.78□□□□□ -1.8
NEDD4-201ENST00000338963 MRAP2Q96G30 205 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 ZNF649Q9BS31 505 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 C11orf84Q9BUA3 381 aaPredicted RBP3.78□□□□□ -1.8
NEDD4-201ENST00000338963 TMEM38AQ9H6F2 299 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 C12orf49Q9H741 205 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 CENPMQ9NSP4 180 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 B3GAT1Q9P2W7 334 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 MTFP1Q9UDX5 166 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 NALCNQ8IZF0 1738 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 IFITM10A6NMD0 228 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 PRAMEF26H0Y7S4 382 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 PRRG1O14668 218 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 TBX19O60806 448 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 PRAMEF11O60813 436 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 GPR37L1O60883 481 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 ADH1BP00325 375 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 AMBPP02760 352 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 HTR1FP30939 366 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 CYB561P49447 251 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 RND2P52198 227 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 OAZ1P54368 228 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 TRA2BP62995 288 aaKnown RBP3.78□□□□□ -1.8
NEDD4-201ENST00000338963 RGNQ15493 299 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 ZNF750Q32MQ0 723 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 PRAMEF5Q5TYX0 476 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 MARC1Q5VT66 337 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 PRAMEF6Q5VXH4 476 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 PSAPL1Q6NUJ1 521 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 DEFB128Q7Z7B8 93 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 C12orf76Q8N812 135 aaPredicted RBP3.78□□□□□ -1.8
NEDD4-201ENST00000338963 OR13C5Q8NGS8 318 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 ABHD4Q8TB40 342 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 SPATC1LQ9H0A9 340 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 SPANXCQ9NY87 97 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 SLC25A37Q9NYZ2 338 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 KIAA1456Q9P272 454 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 SEMA5BQ9P283 1151 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 NTNG1Q9Y2I2 539 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 AK6Q9Y3D8 172 aaKnown RBP3.78□□□□□ -1.8
NEDD4-201ENST00000338963 WIPI2Q9Y4P8 454 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 SCN4AP35499 1836 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 MARF1Q9Y4F3 1742 aaKnown RBP3.78□□□□□ -1.8
NEDD4-201ENST00000338963 PLCH1Q4KWH8 1693 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 IGLV3-22A0A075B6J6 115 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 TMEM265A0A087WTH1 108 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 HEPACAM2A8MVW5 462 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 CA11O75493 328 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 PAPLNO95428 1278 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 DUS4LO95620 317 aaKnown RBP3.78□□□□□ -1.8
NEDD4-201ENST00000338963 ONECUT2O95948 504 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 JCHAINP01591 159 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 SFTPBP07988 381 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 LIMS3P0CW19 117 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 LIMS4P0CW20 117 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 ALPPL2P10696 532 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 WNT3AP56704 352 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 RAB30Q15771 203 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 TRMT12Q53H54 448 aaKnown RBP3.78□□□□□ -1.8
NEDD4-201ENST00000338963 Q6ZSR9 355 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 TAS1R1Q7RTX1 841 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 LRRC70Q7Z2Q7 622 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 PGBD5Q8N414 524 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 WDTC1Q8N5D0 677 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 OR52I2Q8NH67 350 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 MACROD1Q9BQ69 325 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 CST9LQ9H4G1 147 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 LAMTOR2Q9Y2Q5 125 aa3.78□□□□□ -1.8
NEDD4-201ENST00000338963 NHSL1Q5SYE7 1610 aa3.78□□□□□ -1.81
NEDD4-201ENST00000338963 IGHV2OR16-5A0A0B4J2B6 119 aa3.78□□□□□ -1.81
NEDD4-201ENST00000338963 AQP7P3A6NL99 342 aa3.78□□□□□ -1.81
NEDD4-201ENST00000338963 H7BYZ3 331 aa3.78□□□□□ -1.81
NEDD4-201ENST00000338963 PDGFBP01127 241 aaPredicted RBP3.78□□□□□ -1.81
NEDD4-201ENST00000338963 FOXA1P55317 472 aa3.78□□□□□ -1.81
NEDD4-201ENST00000338963 ATXN7L3Q14CW9 347 aaPredicted RBP3.78□□□□□ -1.81
NEDD4-201ENST00000338963 ARHGAP11BQ3KRB8 267 aa3.78□□□□□ -1.81
NEDD4-201ENST00000338963 PDZD11Q5EBL8 140 aa3.78□□□□□ -1.81
NEDD4-201ENST00000338963 TCTEX1D4Q5JR98 221 aa3.78□□□□□ -1.81
NEDD4-201ENST00000338963 SLC36A1Q7Z2H8 476 aa3.78□□□□□ -1.81
NEDD4-201ENST00000338963 ZNF429Q86V71 674 aa3.78□□□□□ -1.81
NEDD4-201ENST00000338963 OR4P4Q8NGL7 312 aa3.78□□□□□ -1.81
NEDD4-201ENST00000338963 SECTM1Q8WVN6 248 aa3.78□□□□□ -1.81
NEDD4-201ENST00000338963 SPRYD4Q8WW59 207 aaPredicted RBP3.78□□□□□ -1.81
NEDD4-201ENST00000338963 UBE2FQ969M7 185 aa3.78□□□□□ -1.81
NEDD4-201ENST00000338963 ISOC2Q96AB3 205 aa3.78□□□□□ -1.81
NEDD4-201ENST00000338963 AMDHD1Q96NU7 426 aa3.78□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms