RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 TRAPPC2LH3BP13 241 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 PSKH1P11801 424 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 ZNF17P17021 662 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 ZNF93P35789 620 aaPredicted RBP6.19□□□□□ -1.42
SF3B1-201ENST00000335508 BCL2A1Q16548 175 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 TBRG1Q3YBR2 411 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 ZNF782Q6ZMW2 699 aaPredicted RBP6.19□□□□□ -1.42
SF3B1-201ENST00000335508 MEX3DQ86XN8 651 aaKnown RBP6.19□□□□□ -1.42
SF3B1-201ENST00000335508 ZNF775Q96BV0 537 aaPredicted RBP6.19□□□□□ -1.42
SF3B1-201ENST00000335508 DCLRE1CQ96SD1 692 aaKnown RBP6.19□□□□□ -1.42
SF3B1-201ENST00000335508 GPX7Q96SL4 187 aaPredicted RBP6.19□□□□□ -1.42
SF3B1-201ENST00000335508 SLC25A21Q9BQT8 299 aaPredicted RBP6.19□□□□□ -1.42
SF3B1-201ENST00000335508 NICN1Q9BSH3 213 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 ANGPTL4Q9BY76 406 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 VNN3Q9NY84 501 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 A0A0X1KG70 313 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 ZNF736B4DX44 427 aaPredicted RBP6.18□□□□□ -1.42
SF3B1-201ENST00000335508 EEF1E1-BLOC1S5C9J1V9 151 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 EEF1E1O43324 174 aaKnown RBP6.18□□□□□ -1.42
SF3B1-201ENST00000335508 PET100P0DJ07 73 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 ZNF44P15621 663 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 ERP29P30040 261 aaKnown RBP6.18□□□□□ -1.42
SF3B1-201ENST00000335508 IDH3GP51553 393 aaPredicted RBP6.18□□□□□ -1.42
SF3B1-201ENST00000335508 ZFP36L1Q07352 338 aaKnown RBP6.18□□□□□ -1.42
SF3B1-201ENST00000335508 SLC22A6Q4U2R8 563 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 NKAPLQ5M9Q1 402 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 MRPL14Q6P1L8 145 aaKnown RBP6.18□□□□□ -1.42
SF3B1-201ENST00000335508 TMEM179BQ7Z7N9 219 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 CMTM1Q8IZ96 169 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 ZNF321PQ8N8H1 164 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 OR52I1Q8NGK6 324 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 TRMT10AQ8TBZ6 339 aaKnown RBP6.18□□□□□ -1.42
SF3B1-201ENST00000335508 PLK3Q9H4B4 646 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 OBP2BQ9NPH6 170 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 NDRG3Q9UGV2 375 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 HRH3Q9Y5N1 445 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 LOC102723996A0A087X1L8 192 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 A0A1W2PPK0 400 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 DOK2O60496 412 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 ZNF16P17020 682 aaPredicted RBP6.18□□□□□ -1.42
SF3B1-201ENST00000335508 TNFSF8P32971 234 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 DLX5P56178 289 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 TMEM211Q6ICI0 200 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 CNIH2Q6PI25 160 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 LSRQ86X29 649 aaPredicted RBP6.18□□□□□ -1.42
SF3B1-201ENST00000335508 C9orf40Q8IXQ3 194 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 CPEB3Q8NE35 698 aaKnown RBP6.18□□□□□ -1.42
SF3B1-201ENST00000335508 TECTBQ96PL2 329 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 BCL2L14Q9BZR8 327 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 GALNT9Q9HCQ5 603 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 SESN1Q9Y6P5 492 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 LOC107986453A0A1B0GWG9 222 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 LYRM1O43325 122 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 GFRA3O60609 400 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 CAPNS1P04632 268 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 AMY2BP19961 511 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 TAS2R31P59538 309 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 PCK2Q16822 640 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 ZNF718Q3SXZ3 478 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 ARTNQ5T4W7 220 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 AWAT2Q6E213 333 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 HPS1Q92902 700 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 UBE2FQ969M7 185 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 C4orf45Q96LM5 186 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 PAPOLGQ9BWT3 736 aaKnown RBP6.18□□□□□ -1.42
SF3B1-201ENST00000335508 NDUFB11Q9NX14 153 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 B4DXG7 233 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 TSPAN2O60636 221 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 TK1P04183 234 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 SELEP16581 610 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 CNR1P21554 472 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 DCTDP32321 178 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 RBP2P50120 134 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 EFNA3P52797 238 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 C1orf174Q8IYL3 243 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 C1orf87Q8N0U7 546 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 TBC1D15Q8TC07 691 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 KTI12Q96EK9 354 aaPredicted RBP6.18□□□□□ -1.42
SF3B1-201ENST00000335508 TXNDC15Q96J42 360 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 OR10A4Q9H209 315 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 CRLF2Q9HC73 371 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 ZNF701Q9NV72 531 aaPredicted RBP6.18□□□□□ -1.42
SF3B1-201ENST00000335508 NTNG1Q9Y2I2 539 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 HEATR5BQ9P2D3 2071 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 LIPT2A6NK58 231 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 A8MV72 311 aaPredicted RBP6.18□□□□□ -1.42
SF3B1-201ENST00000335508 P2RY6Q15077 328 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 SFXN4Q6P4A7 337 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 ADPRHL1Q8NDY3 354 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 PFN4Q8NHR9 129 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 GRPEL2Q8TAA5 225 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 ZNF721Q8TF20 911 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 BCO1Q9HAY6 547 aa6.18□□□□□ -1.42
SF3B1-201ENST00000335508 RBFOX1Q9NWB1 397 aaKnown RBP6.18□□□□□ -1.42
SF3B1-201ENST00000335508 C2orf72A6NCS6 295 aa6.17□□□□□ -1.42
SF3B1-201ENST00000335508 ANKRD61A6NGH8 418 aa6.17□□□□□ -1.42
SF3B1-201ENST00000335508 NTN3O00634 580 aaPredicted RBP6.17□□□□□ -1.42
SF3B1-201ENST00000335508 HTR3BO95264 441 aa6.17□□□□□ -1.42
SF3B1-201ENST00000335508 AGTR1P30556 359 aa6.17□□□□□ -1.42
SF3B1-201ENST00000335508 RAB35Q15286 201 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms