RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 INPP5EQ9NRR6 644 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 GIN1Q9NXP7 522 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 QPCTLQ9NXS2 382 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 PTTG3PQ9NZH4 202 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 PEF1Q9UBV8 284 aaKnown RBP2.18□□□□□ -2.06
HMGB1-201ENST00000326004 GPR179Q6PRD1 2367 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 LAMA2P24043 3122 aaKnown RBP2.18□□□□□ -2.06
HMGB1-201ENST00000326004 MAST4O15021 2626 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 ARID1AO14497 2285 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 LAMA3Q16787 3333 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 TRANK1O15050 2925 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 UQCRHLA0A096LP55 91 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 IGKV6D-21A0A0A0MT36 114 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 TRBV6-6A0A0A6YYG2 114 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 TRBV11-1A0A0K0K1C0 115 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 A6NDX4 124 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 C12orf71A8MTZ7 269 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 C12orf77C9JDV5 145 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 TEX46H3BTG2 121 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 DYNC1I1O14576 645 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 CLOCKO15516 846 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 SPOPO43791 374 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 MMP1P03956 469 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 SERPIND1P05546 499 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 S100A9P06702 114 aaKnown RBP2.17□□□□□ -2.06
HMGB1-201ENST00000326004 TPM3P06753 285 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 UQCRHP07919 91 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 ERCC1P07992 297 aaPredicted RBP2.17□□□□□ -2.06
HMGB1-201ENST00000326004 HOXC4P09017 264 aaPredicted RBP2.17□□□□□ -2.06
HMGB1-201ENST00000326004 TPM1P09493 284 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 GIPP09681 153 aaPredicted RBP2.17□□□□□ -2.06
HMGB1-201ENST00000326004 TDGF1P13385 188 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 CCL5P13501 91 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 CCNB1P14635 433 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 HPGDP15428 266 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 ZNF43P17038 809 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 RCC1P18754 421 aaPredicted RBP2.17□□□□□ -2.06
HMGB1-201ENST00000326004 TDGF1P3P51864 188 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 UCNP55089 124 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 KCNJ2P63252 427 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 ILKQ13418 452 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 UNC119Q13432 240 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 GNMTQ14749 295 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 LRRC10Q5BKY1 277 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 SASS6Q6UVJ0 657 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 ZNF620Q6ZNG0 422 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 NIPA1Q7RTP0 329 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 SCD5Q86SK9 330 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 ZNF546Q86UE3 836 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 ZNF429Q86V71 674 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 MFSD6LQ8IWD5 586 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 ENTHD1Q8IYW4 607 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 GABRG1Q8N1C3 465 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 PQLC3Q8N755 202 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 ZNF433Q8N7K0 673 aaPredicted RBP2.17□□□□□ -2.06
HMGB1-201ENST00000326004 Q8N9W7 124 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 MDS2Q8NDY4 140 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 NPBQ8NG41 125 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 OR10G9Q8NGN4 311 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 GLYATL2Q8WU03 294 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 PYROXD1Q8WU10 500 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 NDRG1Q92597 394 aaKnown RBP2.17□□□□□ -2.06
HMGB1-201ENST00000326004 DCPSQ96C86 337 aaKnown RBP2.17□□□□□ -2.06
HMGB1-201ENST00000326004 ZNF641Q96N77 438 aaPredicted RBP2.17□□□□□ -2.06
HMGB1-201ENST00000326004 FAM210AQ96ND0 272 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 PAIP2Q9BPZ3 127 aaKnown RBP2.17□□□□□ -2.06
HMGB1-201ENST00000326004 ANKRD60Q9BZ19 345 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 DEFB127Q9H1M4 99 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 RNF167Q9H6Y7 350 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 NIPAL2Q9H841 368 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 CYP3A43Q9HB55 503 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 EML4Q9HC35 981 aaKnown RBP2.17□□□□□ -2.06
HMGB1-201ENST00000326004 MRPL22Q9NWU5 206 aaKnown RBP2.17□□□□□ -2.06
HMGB1-201ENST00000326004 AHSPQ9NZD4 102 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 CLCF1Q9UBD9 225 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 KCNIP3Q9Y2W7 256 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 SLC25A15Q9Y619 301 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 POLR3AO14802 1390 aaPredicted RBP2.17□□□□□ -2.06
HMGB1-201ENST00000326004 TAF1LQ8IZX4 1826 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 CEP162Q5TB80 1403 aa2.17□□□□□ -2.06
HMGB1-201ENST00000326004 CENPFP49454 3210 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 FASNP49327 2511 aaKnown RBP2.16□□□□□ -2.06
HMGB1-201ENST00000326004 ABCC11Q96J66 1382 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 RBMY1BA6NDE4 496 aaKnown RBP2.16□□□□□ -2.06
HMGB1-201ENST00000326004 RBMY1EA6NEQ0 496 aaKnown RBP2.16□□□□□ -2.06
HMGB1-201ENST00000326004 FAM166BA8MTA8 275 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 PES1O00541 588 aaKnown RBP2.16□□□□□ -2.06
HMGB1-201ENST00000326004 EIF3HO15372 352 aaKnown RBP eCLIP2.16□□□□□ -2.06
HMGB1-201ENST00000326004 SLC31A2O15432 143 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 PSTPIP1O43586 416 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 FLOT1O75955 427 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 OR2J3O76001 311 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 MOSP00540 346 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 RBMY1DP0C7P1 496 aaKnown RBP2.16□□□□□ -2.06
HMGB1-201ENST00000326004 PNMA6AP0CW24 399 aaPredicted RBP2.16□□□□□ -2.06
HMGB1-201ENST00000326004 RBMY1A1P0DJD3 496 aaKnown RBP2.16□□□□□ -2.06
HMGB1-201ENST00000326004 ADRB3P13945 408 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 ZNF24P17028 368 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 SRMP19623 302 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 GSTM3P21266 225 aa2.16□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms