RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 TMEFF2Q9UIK5 374 aaPredicted RBP15.86■□□□□ 0.13
SYNPO-201ENST00000307662 NSG2Q9Y328 171 aa15.86■□□□□ 0.13
SYNPO-201ENST00000307662 TMEM127O75204 238 aa15.85■□□□□ 0.13
SYNPO-201ENST00000307662 TBPP20226 339 aa15.85■□□□□ 0.13
SYNPO-201ENST00000307662 RPL34P49207 117 aaKnown RBP15.85■□□□□ 0.13
SYNPO-201ENST00000307662 DUSP8Q13202 625 aa15.85■□□□□ 0.13
SYNPO-201ENST00000307662 OTUD1Q5VV17 481 aaPredicted RBP15.85■□□□□ 0.13
SYNPO-201ENST00000307662 CLEC9AQ6UXN8 241 aa15.85■□□□□ 0.13
SYNPO-201ENST00000307662 SMIM15Q7Z3B0 74 aa15.85■□□□□ 0.13
SYNPO-201ENST00000307662 GALNT16Q8N428 558 aa15.85■□□□□ 0.13
SYNPO-201ENST00000307662 OR52B4Q8NGK2 314 aa15.85■□□□□ 0.13
SYNPO-201ENST00000307662 BCL2L10Q9HD36 194 aa15.85■□□□□ 0.13
SYNPO-201ENST00000307662 SDHAP31040 664 aa15.85■□□□□ 0.13
SYNPO-201ENST00000307662 SSBP1Q04837 148 aaKnown RBP15.85■□□□□ 0.13
SYNPO-201ENST00000307662 MARCH3Q86UD3 253 aa15.85■□□□□ 0.13
SYNPO-201ENST00000307662 GJC3Q8NFK1 279 aa15.85■□□□□ 0.13
SYNPO-201ENST00000307662 TSLPQ969D9 159 aa15.85■□□□□ 0.13
SYNPO-201ENST00000307662 ZNF775Q96BV0 537 aaPredicted RBP15.85■□□□□ 0.13
SYNPO-201ENST00000307662 HIF1ANQ9NWT6 349 aa15.85■□□□□ 0.13
SYNPO-201ENST00000307662 GAR1Q9NY12 217 aaKnown RBP15.85■□□□□ 0.13
SYNPO-201ENST00000307662 TRAV1-2A0A0B4J238 106 aa15.85■□□□□ 0.13
SYNPO-201ENST00000307662 EPXP11678 715 aa15.85■□□□□ 0.13
SYNPO-201ENST00000307662 TRMT12Q53H54 448 aaKnown RBP15.85■□□□□ 0.13
SYNPO-201ENST00000307662 MANEAQ5SRI9 462 aa15.85■□□□□ 0.13
SYNPO-201ENST00000307662 TMEM71Q6P5X7 295 aa15.85■□□□□ 0.13
SYNPO-201ENST00000307662 H1FNTQ75WM6 255 aaPredicted RBP15.85■□□□□ 0.13
SYNPO-201ENST00000307662 TMEM123Q8N131 208 aa15.85■□□□□ 0.13
SYNPO-201ENST00000307662 RBMXL3Q8N7X1 1067 aaKnown RBP15.85■□□□□ 0.13
SYNPO-201ENST00000307662 PPP1R1CQ8WVI7 109 aa15.85■□□□□ 0.13
SYNPO-201ENST00000307662 MAP3K3Q99759 626 aa15.85■□□□□ 0.13
SYNPO-201ENST00000307662 H0Y8G0 127 aa15.85■□□□□ 0.13
SYNPO-201ENST00000307662 XRCC3O43542 346 aa15.85■□□□□ 0.13
SYNPO-201ENST00000307662 METTL15P1P0C7V9 234 aa15.85■□□□□ 0.13
SYNPO-201ENST00000307662 YPEL5P62699 121 aa15.85■□□□□ 0.13
SYNPO-201ENST00000307662 EGR3Q06889 387 aa15.85■□□□□ 0.13
SYNPO-201ENST00000307662 OR51A2Q8NGJ7 313 aa15.85■□□□□ 0.13
SYNPO-201ENST00000307662 OR8U1Q8NH10 309 aa15.85■□□□□ 0.13
SYNPO-201ENST00000307662 FGF13Q92913 245 aa15.85■□□□□ 0.13
SYNPO-201ENST00000307662 SUCNR1Q9BXA5 334 aa15.85■□□□□ 0.13
SYNPO-201ENST00000307662 HDAC8Q9BY41 377 aa15.85■□□□□ 0.13
SYNPO-201ENST00000307662 MARCH5Q9NX47 278 aa15.85■□□□□ 0.13
SYNPO-201ENST00000307662 ZNF727A8MUV8 499 aa15.84■□□□□ 0.13
SYNPO-201ENST00000307662 IL5P05113 134 aa15.84■□□□□ 0.13
SYNPO-201ENST00000307662 OR8U8P0C7N1 319 aa15.84■□□□□ 0.13
SYNPO-201ENST00000307662 PTAFRP25105 342 aa15.84■□□□□ 0.13
SYNPO-201ENST00000307662 GLDNQ6ZMI3 551 aaPredicted RBP15.84■□□□□ 0.13
SYNPO-201ENST00000307662 EMG1Q92979 244 aaKnown RBP15.84■□□□□ 0.13
SYNPO-201ENST00000307662 C2orf50Q96LR7 162 aa15.84■□□□□ 0.13
SYNPO-201ENST00000307662 ZNF331Q9NQX6 463 aaPredicted RBP15.84■□□□□ 0.13
SYNPO-201ENST00000307662 MRPL22Q9NWU5 206 aaKnown RBP15.84■□□□□ 0.13
SYNPO-201ENST00000307662 LRIT1Q9P2V4 623 aa15.84■□□□□ 0.13
SYNPO-201ENST00000307662 MMACHCQ9Y4U1 282 aa15.84■□□□□ 0.13
SYNPO-201ENST00000307662 A0A1B0GUL6 1792 aa15.84■□□□□ 0.13
SYNPO-201ENST00000307662 HSPB2A8KAH6 182 aa15.84■□□□□ 0.13
SYNPO-201ENST00000307662 ZNF85Q03923 595 aa15.84■□□□□ 0.13
SYNPO-201ENST00000307662 HSPB2Q16082 182 aa15.84■□□□□ 0.13
SYNPO-201ENST00000307662 LINC00303Q3SY05 128 aa15.84■□□□□ 0.13
SYNPO-201ENST00000307662 CATSPERDQ86XM0 798 aa15.84■□□□□ 0.13
SYNPO-201ENST00000307662 ZFP62Q8NB50 900 aaPredicted RBP15.84■□□□□ 0.13
SYNPO-201ENST00000307662 SEMA6DQ8NFY4 1073 aa15.84■□□□□ 0.13
SYNPO-201ENST00000307662 OR4C16Q8NGL9 310 aa15.84■□□□□ 0.13
SYNPO-201ENST00000307662 FLVCR1Q9Y5Y0 555 aa15.84■□□□□ 0.13
SYNPO-201ENST00000307662 ANKRD61A6NGH8 418 aa15.84■□□□□ 0.13
SYNPO-201ENST00000307662 F11P03951 625 aa15.84■□□□□ 0.13
SYNPO-201ENST00000307662 HOXC8P31273 242 aa15.84■□□□□ 0.13
SYNPO-201ENST00000307662 HOXD11P31277 338 aaPredicted RBP15.84■□□□□ 0.13
SYNPO-201ENST00000307662 SLC25A35Q3KQZ1 300 aa15.84■□□□□ 0.13
SYNPO-201ENST00000307662 TMEM52BQ4KMG9 183 aa15.84■□□□□ 0.13
SYNPO-201ENST00000307662 FBXW5Q969U6 566 aa15.84■□□□□ 0.13
SYNPO-201ENST00000307662 WDFY2Q96P53 400 aa15.84■□□□□ 0.13
SYNPO-201ENST00000307662 SLC22A12Q96S37 553 aa15.84■□□□□ 0.13
SYNPO-201ENST00000307662 HEYLQ9NQ87 328 aaPredicted RBP15.84■□□□□ 0.13
SYNPO-201ENST00000307662 KIR2DS1A0A191URI9 304 aa15.84■□□□□ 0.13
SYNPO-201ENST00000307662 A0A1W2PR48 441 aa15.84■□□□□ 0.13
SYNPO-201ENST00000307662 EIF1BO60739 113 aaKnown RBP15.84■□□□□ 0.13
SYNPO-201ENST00000307662 KIR2DS4P43632 304 aa15.84■□□□□ 0.13
SYNPO-201ENST00000307662 KIR2DS1Q14954 304 aa15.84■□□□□ 0.13
SYNPO-201ENST00000307662 PHOSPHO2Q8TCD6 241 aa15.84■□□□□ 0.13
SYNPO-201ENST00000307662 NARFLQ9H6Q4 476 aa15.84■□□□□ 0.13
SYNPO-201ENST00000307662 PCDHB10Q9UN67 800 aa15.84■□□□□ 0.13
SYNPO-201ENST00000307662 LHX6Q9UPM6 363 aa15.84■□□□□ 0.13
SYNPO-201ENST00000307662 EIF4E2O60573 245 aaKnown RBP15.83■□□□□ 0.13
SYNPO-201ENST00000307662 HSF5Q4G112 596 aaPredicted RBP15.83■□□□□ 0.13
SYNPO-201ENST00000307662 BTNL8Q6UX41 500 aa15.83■□□□□ 0.13
SYNPO-201ENST00000307662 GRINAQ7Z429 371 aa15.83■□□□□ 0.13
SYNPO-201ENST00000307662 TMEM18Q96B42 140 aa15.83■□□□□ 0.13
SYNPO-201ENST00000307662 CABLES2Q9BTV7 478 aa15.83■□□□□ 0.13
SYNPO-201ENST00000307662 CYSLTR2Q9NS75 346 aa15.83■□□□□ 0.13
SYNPO-201ENST00000307662 CTSLP07711 333 aa15.83■□□□□ 0.12
SYNPO-201ENST00000307662 SLC2A1P11166 492 aa15.83■□□□□ 0.12
SYNPO-201ENST00000307662 RPA2P15927 270 aa15.83■□□□□ 0.12
SYNPO-201ENST00000307662 NKG7Q16617 165 aa15.83■□□□□ 0.12
SYNPO-201ENST00000307662 CPEB4Q17RY0 729 aaKnown RBP eCLIP15.83■□□□□ 0.12
SYNPO-201ENST00000307662 NECAP1Q8NC96 275 aa15.83■□□□□ 0.12
SYNPO-201ENST00000307662 OR5AP2Q8NGF4 316 aa15.83■□□□□ 0.12
SYNPO-201ENST00000307662 TOLLIPQ9H0E2 274 aa15.83■□□□□ 0.12
SYNPO-201ENST00000307662 RHOFQ9HBH0 211 aa15.83■□□□□ 0.12
SYNPO-201ENST00000307662 NSG1A0A0A6YYJ2 146 aa15.83■□□□□ 0.12
SYNPO-201ENST00000307662 RFPL4AA6NLU0 287 aa15.83■□□□□ 0.12
SYNPO-201ENST00000307662 RFPL4AL1F8VTS6 287 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms