RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 MKKSQ9NPJ1 570 aaPredicted RBP9.3□□□□□ -0.92
UPF3B-201ENST00000276201 MRTO4Q9UKD2 239 aaKnown RBP9.3□□□□□ -0.92
UPF3B-201ENST00000276201 ADAMTS20P59510 1910 aa9.3□□□□□ -0.92
UPF3B-201ENST00000276201 TMEM212A6NML5 194 aa9.3□□□□□ -0.92
UPF3B-201ENST00000276201 OR4C45A6NMZ5 311 aa9.3□□□□□ -0.92
UPF3B-201ENST00000276201 F8W036 122 aa9.3□□□□□ -0.92
UPF3B-201ENST00000276201 PEX12O00623 359 aa9.3□□□□□ -0.92
UPF3B-201ENST00000276201 TOX3O15405 576 aaPredicted RBP9.3□□□□□ -0.92
UPF3B-201ENST00000276201 CDC40O60508 579 aaKnown RBP eCLIP9.3□□□□□ -0.92
UPF3B-201ENST00000276201 TXNDC12O95881 172 aa9.3□□□□□ -0.92
UPF3B-201ENST00000276201 PLATP00750 562 aa9.3□□□□□ -0.92
UPF3B-201ENST00000276201 CD74P04233 296 aa9.3□□□□□ -0.92
UPF3B-201ENST00000276201 RLN1P04808 185 aa9.3□□□□□ -0.92
UPF3B-201ENST00000276201 OR4E1P0C645 316 aa9.3□□□□□ -0.92
UPF3B-201ENST00000276201 PRSS3P35030 304 aa9.3□□□□□ -0.92
UPF3B-201ENST00000276201 RAB13P51153 203 aa9.3□□□□□ -0.92
UPF3B-201ENST00000276201 PRPS1P60891 318 aa9.3□□□□□ -0.92
UPF3B-201ENST00000276201 DEFA5Q01523 94 aa9.3□□□□□ -0.92
UPF3B-201ENST00000276201 NAAAQ02083 359 aa9.3□□□□□ -0.92
UPF3B-201ENST00000276201 FAM166AQ6J272 317 aa9.3□□□□□ -0.92
UPF3B-201ENST00000276201 C11orf87Q6NUJ2 197 aa9.3□□□□□ -0.92
UPF3B-201ENST00000276201 STEAP1BQ6NZ63 245 aa9.3□□□□□ -0.92
UPF3B-201ENST00000276201 OR2W3Q7Z3T1 314 aa9.3□□□□□ -0.92
UPF3B-201ENST00000276201 SKA3Q8IX90 412 aa9.3□□□□□ -0.92
UPF3B-201ENST00000276201 MCHR2Q969V1 340 aa9.3□□□□□ -0.92
UPF3B-201ENST00000276201 NARS2Q96I59 477 aaKnown RBP9.3□□□□□ -0.92
UPF3B-201ENST00000276201 ZNF768Q9H5H4 540 aaKnown RBP9.3□□□□□ -0.92
UPF3B-201ENST00000276201 ST6GALNAC1Q9NSC7 600 aaPredicted RBP9.3□□□□□ -0.92
UPF3B-201ENST00000276201 TMEM100Q9NV29 134 aa9.3□□□□□ -0.92
UPF3B-201ENST00000276201 DNAJB12Q9NXW2 375 aaKnown RBP9.3□□□□□ -0.92
UPF3B-201ENST00000276201 FOXJ2Q9P0K8 574 aa9.3□□□□□ -0.92
UPF3B-201ENST00000276201 SEMA5BQ9P283 1151 aa9.3□□□□□ -0.92
UPF3B-201ENST00000276201 ZNF337Q9Y3M9 751 aa9.3□□□□□ -0.92
UPF3B-201ENST00000276201 PKD1L2Q7Z442 2459 aa9.3□□□□□ -0.92
UPF3B-201ENST00000276201 ZZEF1O43149 2961 aa9.3□□□□□ -0.92
UPF3B-201ENST00000276201 IGHV5-51A0A0C4DH38 117 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 OR14I1A6ND48 311 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 URADA6NGE7 173 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 FAM25EA8MYX2 175 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 B4E171 279 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 C9orf172C9J069 976 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 MCIDASD6RGH6 385 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 PHYHO14832 338 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 MAGEB4O15481 346 aaPredicted RBP9.29□□□□□ -0.92
UPF3B-201ENST00000276201 FCER2P06734 321 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 GTF2F2P13984 249 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 ZNF10P21506 573 aaPredicted RBP9.29□□□□□ -0.92
UPF3B-201ENST00000276201 PAX6P26367 422 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 TSPAN7P41732 249 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 CLDN12P56749 244 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 EGR3Q06889 387 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 MGAT2Q10469 447 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 SNTB1Q13884 538 aaKnown RBP9.29□□□□□ -0.92
UPF3B-201ENST00000276201 ZNF141Q15928 474 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 ARMC6Q6NXE6 501 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 C3orf33Q6P1S2 294 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 NDUFAF7Q7L592 441 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 CDC20BQ86Y33 519 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 GABRG1Q8N1C3 465 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 BEST3Q8N1M1 668 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 OR51S1Q8NGJ8 323 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 OIT3Q8WWZ8 545 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 CTHRC1Q96CG8 243 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 MAP3K3Q99759 626 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 LMF2Q9BU23 707 aaKnown RBP9.29□□□□□ -0.92
UPF3B-201ENST00000276201 EXO5Q9H790 373 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 SYNPO2LQ9H987 977 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 SLC2A8Q9NY64 477 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 DAPP1Q9UN19 280 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 URB1O60287 2271 aaKnown RBP9.29□□□□□ -0.92
UPF3B-201ENST00000276201 KMT2BQ9UMN6 2715 aaPredicted RBP9.29□□□□□ -0.92
UPF3B-201ENST00000276201 OR6C68A6NDL8 312 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 TLCD2A6NGC4 264 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 OR5H14A6NHG9 310 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 PRSS44E7EML9 344 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 F8VVB4 439 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 F8VWA3 439 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 P2RX6O15547 441 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 B3GALT2O43825 422 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 ANXA2P07355 339 aaKnown RBP9.29□□□□□ -0.92
UPF3B-201ENST00000276201 ZNF888P0CJ79 500 aaPredicted RBP9.29□□□□□ -0.92
UPF3B-201ENST00000276201 CD79AP11912 226 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 FOLR2P14207 255 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 RASGEF1BQ0VAM2 473 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 PNLIPRP3Q17RR3 467 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 ALG10BQ5I7T1 473 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 FAHD2BQ6P2I3 314 aaPredicted RBP9.29□□□□□ -0.92
UPF3B-201ENST00000276201 NUP54Q7Z3B4 507 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 RELL2Q8NC24 303 aaPredicted RBP9.29□□□□□ -0.92
UPF3B-201ENST00000276201 FAHD2AQ96GK7 314 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 SLC41A2Q96JW4 573 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 MACROD1Q9BQ69 325 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 ALG12Q9BV10 488 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 TMEM138Q9NPI0 162 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 MLXQ9UH92 298 aa9.29□□□□□ -0.92
UPF3B-201ENST00000276201 MRM2Q9UI43 246 aaKnown RBP9.29□□□□□ -0.92
UPF3B-201ENST00000276201 AHCTF1Q8WYP5 2266 aa9.28□□□□□ -0.92
UPF3B-201ENST00000276201 A0A087WUJ7 227 aa9.28□□□□□ -0.92
UPF3B-201ENST00000276201 LOC100289279A0A1B0GTE1 492 aa9.28□□□□□ -0.92
UPF3B-201ENST00000276201 TMEM82A0PJX8 343 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms