RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 RNF121Q9H920 327 aa13.97□□□□□ -0.17
CLN3-251ENST00000636853 FAM240BA0A1B0GVZ2 78 aa13.96□□□□□ -0.17
CLN3-251ENST00000636853 GPR171O14626 319 aa13.96□□□□□ -0.17
CLN3-251ENST00000636853 FAM157BP0CG42 384 aa13.96□□□□□ -0.17
CLN3-251ENST00000636853 ADH6P28332 368 aa13.96□□□□□ -0.17
CLN3-251ENST00000636853 UBE2NLQ5JXB2 153 aa13.96□□□□□ -0.17
CLN3-251ENST00000636853 B3GNTL1Q67FW5 361 aaPredicted RBP13.96□□□□□ -0.17
CLN3-251ENST00000636853 PRSS45Q7RTY3 260 aa13.96□□□□□ -0.17
CLN3-251ENST00000636853 SH2D2AQ9NP31 389 aa13.96□□□□□ -0.17
CLN3-251ENST00000636853 PCDHGA5Q9Y5G8 931 aa13.96□□□□□ -0.17
CLN3-251ENST00000636853 A0A0B4J293 547 aa13.95□□□□□ -0.18
CLN3-251ENST00000636853 SULT2B1O00204 365 aa13.95□□□□□ -0.18
CLN3-251ENST00000636853 IGHEP01854 428 aa13.95□□□□□ -0.18
CLN3-251ENST00000636853 CD3GP09693 182 aa13.95□□□□□ -0.18
CLN3-251ENST00000636853 LIFP15018 202 aa13.95□□□□□ -0.18
CLN3-251ENST00000636853 M6PRP20645 277 aa13.95□□□□□ -0.18
CLN3-251ENST00000636853 SRP9P49458 86 aaKnown RBP13.95□□□□□ -0.18
CLN3-251ENST00000636853 CARD17Q5XLA6 110 aa13.95□□□□□ -0.18
CLN3-251ENST00000636853 TMEM81Q6P7N7 255 aa13.95□□□□□ -0.18
CLN3-251ENST00000636853 PLET1Q6UQ28 207 aa13.95□□□□□ -0.18
CLN3-251ENST00000636853 SERPINA12Q8IW75 414 aa13.95□□□□□ -0.18
CLN3-251ENST00000636853 OR1J4Q8NGS1 313 aa13.95□□□□□ -0.18
CLN3-251ENST00000636853 ZFAND1Q8TCF1 268 aa13.95□□□□□ -0.18
CLN3-251ENST00000636853 ST7LQ8TDW4 575 aa13.95□□□□□ -0.18
CLN3-251ENST00000636853 SLC25A43Q8WUT9 341 aaPredicted RBP13.95□□□□□ -0.18
CLN3-251ENST00000636853 LOXL4Q96JB6 756 aa13.95□□□□□ -0.18
CLN3-251ENST00000636853 RBP7Q96R05 134 aa13.95□□□□□ -0.18
CLN3-251ENST00000636853 TAAR9Q96RI9 348 aa13.95□□□□□ -0.18
CLN3-251ENST00000636853 MRPL13Q9BYD1 178 aaKnown RBP13.95□□□□□ -0.18
CLN3-251ENST00000636853 NIPAL2Q9H841 368 aa13.95□□□□□ -0.18
CLN3-251ENST00000636853 KLHL13Q9P2N7 655 aa13.95□□□□□ -0.18
CLN3-251ENST00000636853 A0A1W2PQ72 361 aa13.95□□□□□ -0.18
CLN3-251ENST00000636853 H0YC42 278 aa13.95□□□□□ -0.18
CLN3-251ENST00000636853 EIF1AYO14602 144 aaKnown RBP13.95□□□□□ -0.18
CLN3-251ENST00000636853 TRAF3IP2O43734 574 aaPredicted RBP13.95□□□□□ -0.18
CLN3-251ENST00000636853 UBL3O95164 117 aa13.95□□□□□ -0.18
CLN3-251ENST00000636853 EIF1AXP47813 144 aaKnown RBP13.95□□□□□ -0.18
CLN3-251ENST00000636853 CCR9P51686 369 aa13.95□□□□□ -0.18
CLN3-251ENST00000636853 CLRN1P58418 232 aa13.95□□□□□ -0.18
CLN3-251ENST00000636853 DGCR2P98153 550 aa13.95□□□□□ -0.18
CLN3-251ENST00000636853 GPR176Q14439 515 aa13.95□□□□□ -0.18
CLN3-251ENST00000636853 RAET1LQ5VY80 246 aa13.95□□□□□ -0.18
CLN3-251ENST00000636853 MTFR2Q6P444 385 aa13.95□□□□□ -0.18
CLN3-251ENST00000636853 KRT74Q7RTS7 529 aa13.95□□□□□ -0.18
CLN3-251ENST00000636853 TMPRSS12Q86WS5 348 aa13.95□□□□□ -0.18
CLN3-251ENST00000636853 NAXDQ8IW45 347 aa13.95□□□□□ -0.18
CLN3-251ENST00000636853 GLB1L2Q8IW92 636 aa13.95□□□□□ -0.18
CLN3-251ENST00000636853 GTPBP8Q8N3Z3 284 aaPredicted RBP13.95□□□□□ -0.18
CLN3-251ENST00000636853 ADAMTS14Q8WXS8 1223 aa13.95□□□□□ -0.18
CLN3-251ENST00000636853 C11orf40Q8WZ69 217 aa13.95□□□□□ -0.18
CLN3-251ENST00000636853 SLC25A38Q96DW6 304 aa13.95□□□□□ -0.18
CLN3-251ENST00000636853 ZC3HAV1LQ96H79 300 aaKnown RBP13.95□□□□□ -0.18
CLN3-251ENST00000636853 FARSAQ9Y285 508 aaKnown RBP13.95□□□□□ -0.18
CLN3-251ENST00000636853 EMC9Q9Y3B6 208 aa13.95□□□□□ -0.18
CLN3-251ENST00000636853 HDGFL3Q9Y3E1 203 aa13.95□□□□□ -0.18
CLN3-251ENST00000636853 PCSK5Q92824 1860 aa13.94□□□□□ -0.18
CLN3-251ENST00000636853 A0A1W2PNU3 283 aaPredicted RBP13.94□□□□□ -0.18
CLN3-251ENST00000636853 C9orf172C9J069 976 aa13.94□□□□□ -0.18
CLN3-251ENST00000636853 CRYZL1O95825 349 aa13.94□□□□□ -0.18
CLN3-251ENST00000636853 RAF1P04049 648 aa13.94□□□□□ -0.18
CLN3-251ENST00000636853 PCK2Q16822 640 aa13.94□□□□□ -0.18
CLN3-251ENST00000636853 CATSPERDQ86XM0 798 aa13.94□□□□□ -0.18
CLN3-251ENST00000636853 ADPRHL1Q8NDY3 354 aa13.94□□□□□ -0.18
CLN3-251ENST00000636853 DUSP18Q8NEJ0 188 aa13.94□□□□□ -0.18
CLN3-251ENST00000636853 MCHR2Q969V1 340 aa13.94□□□□□ -0.18
CLN3-251ENST00000636853 CENPMQ9NSP4 180 aa13.94□□□□□ -0.18
CLN3-251ENST00000636853 OR5V1Q9UGF6 321 aa13.94□□□□□ -0.18
CLN3-251ENST00000636853 CNTRLQ7Z7A1 2325 aa13.94□□□□□ -0.18
CLN3-251ENST00000636853 A0A087WZY1 265 aa13.94□□□□□ -0.18
CLN3-251ENST00000636853 A0A1W2PPL8 197 aa13.94□□□□□ -0.18
CLN3-251ENST00000636853 ANXA2P2A6NMY6 339 aa13.94□□□□□ -0.18
CLN3-251ENST00000636853 A8MV72 311 aaPredicted RBP13.94□□□□□ -0.18
CLN3-251ENST00000636853 ZIC3O60481 467 aa13.94□□□□□ -0.18
CLN3-251ENST00000636853 ANXA2P07355 339 aaKnown RBP13.94□□□□□ -0.18
CLN3-251ENST00000636853 PGA4P0DJD7 388 aa13.94□□□□□ -0.18
CLN3-251ENST00000636853 PGA3P0DJD8 388 aa13.94□□□□□ -0.18
CLN3-251ENST00000636853 ZNF43P17038 809 aa13.94□□□□□ -0.18
CLN3-251ENST00000636853 DSCR4P56555 118 aaPredicted RBP13.94□□□□□ -0.18
CLN3-251ENST00000636853 MFAP5Q13361 173 aa13.94□□□□□ -0.18
CLN3-251ENST00000636853 TNK1Q13470 666 aa13.94□□□□□ -0.18
CLN3-251ENST00000636853 LRFN4Q6PJG9 635 aa13.94□□□□□ -0.18
CLN3-251ENST00000636853 TMPPEQ6ZT21 453 aa13.94□□□□□ -0.18
CLN3-251ENST00000636853 YIPF5Q969M3 257 aa13.94□□□□□ -0.18
CLN3-251ENST00000636853 MIB2Q96AX9 1013 aa13.94□□□□□ -0.18
CLN3-251ENST00000636853 UPRTQ96BW1 309 aa13.94□□□□□ -0.18
CLN3-251ENST00000636853 SLC25A44Q96H78 314 aaPredicted RBP13.94□□□□□ -0.18
CLN3-251ENST00000636853 OXGR1Q96P68 337 aa13.94□□□□□ -0.18
CLN3-251ENST00000636853 ABCG5Q9H222 651 aa13.94□□□□□ -0.18
CLN3-251ENST00000636853 FOXJ2Q9P0K8 574 aa13.94□□□□□ -0.18
CLN3-251ENST00000636853 KLHL9Q9P2J3 617 aa13.94□□□□□ -0.18
CLN3-251ENST00000636853 DKKL1Q9UK85 242 aa13.94□□□□□ -0.18
CLN3-251ENST00000636853 CAMK2AQ9UQM7 478 aa13.94□□□□□ -0.18
CLN3-251ENST00000636853 A0A0G2JMM0 328 aa13.93□□□□□ -0.18
CLN3-251ENST00000636853 A0A1W2PPB8 328 aa13.93□□□□□ -0.18
CLN3-251ENST00000636853 A0A1W2PRS3 328 aa13.93□□□□□ -0.18
CLN3-251ENST00000636853 KIR3DP1A8MWS1 328 aa13.93□□□□□ -0.18
CLN3-251ENST00000636853 SRSF10O75494 262 aaKnown RBP13.93□□□□□ -0.18
CLN3-251ENST00000636853 AQP8O94778 261 aa13.93□□□□□ -0.18
CLN3-251ENST00000636853 IGHG1P01857 330 aa13.93□□□□□ -0.18
CLN3-251ENST00000636853 DNASE1L1P49184 302 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms