RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 CRNNQ9UBG3 495 aaPredicted RBP9.37□□□□□ -0.91
CLN3-248ENST00000636355 ATPIF1Q9UII2 106 aa9.37□□□□□ -0.91
CLN3-248ENST00000636355 POLR1DQ9Y2S0 133 aa9.37□□□□□ -0.91
CLN3-248ENST00000636355 UGT2A1Q9Y4X1 527 aa9.37□□□□□ -0.91
CLN3-248ENST00000636355 CACNA1CQ13936 2221 aa9.37□□□□□ -0.91
CLN3-248ENST00000636355 PTPRQQ9UMZ3 2332 aa9.37□□□□□ -0.91
CLN3-248ENST00000636355 ARHGAP21Q5T5U3 1957 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 IGHV3-15A0A0B4J1V0 119 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 IGKV1D-43A0A0B4J1Z2 117 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 TRAV1-2A0A0B4J238 106 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 A0A1W2PPL8 197 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 PRR32B1ATL7 298 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 E9PI62 339 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 H0YC42 278 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 RPL36A-HNRNPH2H7BZ11 118 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 CRYABP02511 175 aaKnown RBP9.36□□□□□ -0.91
CLN3-248ENST00000636355 RAF1P04049 648 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 UCHL1P09936 223 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 OR8G3PP0DMU2 310 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 KLK2P20151 261 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 OPRL1P41146 370 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 STARP49675 285 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 RORCP51449 518 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 MMP16P51512 607 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 GRB2P62993 217 aaKnown RBP9.36□□□□□ -0.91
CLN3-248ENST00000636355 ETFDHQ16134 617 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 MOGQ16653 247 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 MEP1BQ16820 701 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 RNFT1Q5M7Z0 435 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 C22orf42Q6IC83 251 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 LRFN4Q6PJG9 635 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 AAED1Q7RTV5 226 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 DCXRQ7Z4W1 244 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 ABHD12BQ7Z5M8 362 aaPredicted RBP9.36□□□□□ -0.91
CLN3-248ENST00000636355 ADGRE4PQ86SQ3 457 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 SYT9Q86SS6 491 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 WDFY1Q8IWB7 410 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 OR2G2Q8NGZ5 317 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 OR5AK2Q8NH90 309 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 MCFD2Q8NI22 146 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 TBC1D15Q8TC07 691 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 THEM6Q8WUY1 208 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 C11orf40Q8WZ69 217 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 GHSRQ92847 366 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 KCTD12Q96CX2 325 aaKnown RBP9.36□□□□□ -0.91
CLN3-248ENST00000636355 TRMT61AQ96FX7 289 aaKnown RBP9.36□□□□□ -0.91
CLN3-248ENST00000636355 WDYHV1Q96HA8 205 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 C4orf45Q96LM5 186 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 DCBLD2Q96PD2 775 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 CDADC1Q9BWV3 514 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 WDR12Q9GZL7 423 aaKnown RBP9.36□□□□□ -0.91
CLN3-248ENST00000636355 SLCO5A1Q9H2Y9 848 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 DDX28Q9NUL7 540 aaKnown RBP9.36□□□□□ -0.91
CLN3-248ENST00000636355 TUBD1Q9UJT1 453 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 B3GNT3Q9Y2A9 372 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 ZNF281Q9Y2X9 895 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 LRP12Q9Y561 859 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 CSAG2Q9Y5P2 127 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 LIPGQ9Y5X9 500 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 LHFPL6Q9Y693 200 aa9.36□□□□□ -0.91
CLN3-248ENST00000636355 SIRT4Q9Y6E7 314 aaPredicted RBP9.36□□□□□ -0.91
CLN3-248ENST00000636355 NCOA6Q14686 2063 aaPredicted RBP9.36□□□□□ -0.91
CLN3-248ENST00000636355 PHF3Q92576 2039 aaKnown RBP9.36□□□□□ -0.91
CLN3-248ENST00000636355 BAHCC1Q9P281 2608 aa9.35□□□□□ -0.91
CLN3-248ENST00000636355 PNMA8CA0A1B0GUJ8 204 aa9.35□□□□□ -0.91
CLN3-248ENST00000636355 ACOD1A6NK06 481 aa9.35□□□□□ -0.91
CLN3-248ENST00000636355 SLC22A20A6NK97 555 aa9.35□□□□□ -0.91
CLN3-248ENST00000636355 OR4C45A6NMZ5 311 aa9.35□□□□□ -0.91
CLN3-248ENST00000636355 APOC1P02654 83 aa9.35□□□□□ -0.91
CLN3-248ENST00000636355 UBCP0CG48 685 aaKnown RBP9.35□□□□□ -0.91
CLN3-248ENST00000636355 PSKH1P11801 424 aa9.35□□□□□ -0.91
CLN3-248ENST00000636355 PAX7P23759 505 aa9.35□□□□□ -0.91
CLN3-248ENST00000636355 SELENOPP49908 381 aa9.35□□□□□ -0.91
CLN3-248ENST00000636355 HCCSP53701 268 aa9.35□□□□□ -0.91
CLN3-248ENST00000636355 PSMA6P60900 246 aaKnown RBP9.35□□□□□ -0.91
CLN3-248ENST00000636355 HIST1H3AP68431 136 aa9.35□□□□□ -0.91
CLN3-248ENST00000636355 EIF2S3LQ2VIR3 472 aaKnown RBP9.35□□□□□ -0.91
CLN3-248ENST00000636355 HIST2H3PS2Q5TEC6 136 aa9.35□□□□□ -0.91
CLN3-248ENST00000636355 FAM27BQ5VT28 67 aa9.35□□□□□ -0.91
CLN3-248ENST00000636355 CARD17Q5XLA6 110 aa9.35□□□□□ -0.91
CLN3-248ENST00000636355 TMEM91Q6ZNR0 172 aa9.35□□□□□ -0.91
CLN3-248ENST00000636355 HIST2H3AQ71DI3 136 aa9.35□□□□□ -0.91
CLN3-248ENST00000636355 ZNF627Q7L945 461 aa9.35□□□□□ -0.91
CLN3-248ENST00000636355 MCEMP1Q8IX19 187 aa9.35□□□□□ -0.91
CLN3-248ENST00000636355 ZFP41Q8N8Y5 198 aa9.35□□□□□ -0.91
CLN3-248ENST00000636355 ABHD3Q8WU67 409 aa9.35□□□□□ -0.91
CLN3-248ENST00000636355 SLC39A7Q92504 469 aa9.35□□□□□ -0.91
CLN3-248ENST00000636355 TMEM203Q969S6 136 aa9.35□□□□□ -0.91
CLN3-248ENST00000636355 RELTQ969Z4 430 aa9.35□□□□□ -0.91
CLN3-248ENST00000636355 RNF166Q96A37 237 aaPredicted RBP9.35□□□□□ -0.91
CLN3-248ENST00000636355 NABP1Q96AH0 204 aa9.35□□□□□ -0.91
CLN3-248ENST00000636355 ZNF845Q96IR2 970 aaPredicted RBP9.35□□□□□ -0.91
CLN3-248ENST00000636355 ELOVL3Q9HB03 270 aa9.35□□□□□ -0.91
CLN3-248ENST00000636355 SLCO1C1Q9NYB5 712 aa9.35□□□□□ -0.91
CLN3-248ENST00000636355 SPRR3Q9UBC9 169 aa9.35□□□□□ -0.91
CLN3-248ENST00000636355 CLCF1Q9UBD9 225 aa9.35□□□□□ -0.91
CLN3-248ENST00000636355 GDF2Q9UK05 429 aaPredicted RBP9.35□□□□□ -0.91
CLN3-248ENST00000636355 ING1Q9UK53 422 aaPredicted RBP9.35□□□□□ -0.91
CLN3-248ENST00000636355 NOSIPQ9Y314 301 aaKnown RBP9.35□□□□□ -0.91
CLN3-248ENST00000636355 GRIP1Q9Y3R0 1128 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms