RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 CENPVL3A0A0U1RRI6 287 aa0.87□□□□□ -2.27
SCN1A-208ENST00000625916 SPECC1L-ADORA2AF8WAN1 911 aa0.87□□□□□ -2.27
SCN1A-208ENST00000625916 GOSR2O14653 212 aa0.87□□□□□ -2.27
SCN1A-208ENST00000625916 PEX11AO75192 247 aa0.87□□□□□ -2.27
SCN1A-208ENST00000625916 B3GALNT1O75752 331 aa0.87□□□□□ -2.27
SCN1A-208ENST00000625916 IGLV6-57P01721 117 aa0.87□□□□□ -2.27
SCN1A-208ENST00000625916 HSPA5P11021 654 aaKnown RBP0.87□□□□□ -2.27
SCN1A-208ENST00000625916 WARSP23381 471 aaKnown RBP0.87□□□□□ -2.27
SCN1A-208ENST00000625916 ACAA2P42765 397 aaKnown RBP0.87□□□□□ -2.27
SCN1A-208ENST00000625916 MAGEA8P43361 318 aa0.87□□□□□ -2.27
SCN1A-208ENST00000625916 FUT5Q11128 374 aa0.87□□□□□ -2.27
SCN1A-208ENST00000625916 TWF1Q12792 350 aa0.87□□□□□ -2.27
SCN1A-208ENST00000625916 CDH17Q12864 832 aa0.87□□□□□ -2.27
SCN1A-208ENST00000625916 EXOC3L2Q2M3D2 409 aa0.87□□□□□ -2.27
SCN1A-208ENST00000625916 SPECC1LQ69YQ0 1117 aa0.87□□□□□ -2.27
SCN1A-208ENST00000625916 CASP12Q6UXS9 341 aa0.87□□□□□ -2.27
SCN1A-208ENST00000625916 FBXW12Q6X9E4 464 aa0.87□□□□□ -2.27
SCN1A-208ENST00000625916 SLC16A13Q7RTY0 426 aa0.87□□□□□ -2.27
SCN1A-208ENST00000625916 CDKL3Q8IVW4 592 aaPredicted RBP0.87□□□□□ -2.27
SCN1A-208ENST00000625916 ZNF664Q8N3J9 261 aa0.87□□□□□ -2.27
SCN1A-208ENST00000625916 LIX1Q8N485 282 aa0.87□□□□□ -2.27
SCN1A-208ENST00000625916 ZNF680Q8NEM1 530 aa0.87□□□□□ -2.27
SCN1A-208ENST00000625916 OR10R2Q8NGX6 335 aa0.87□□□□□ -2.27
SCN1A-208ENST00000625916 OR10J6PQ8NGY7 276 aa0.87□□□□□ -2.27
SCN1A-208ENST00000625916 CXorf40AQ8TE69 158 aa0.87□□□□□ -2.27
SCN1A-208ENST00000625916 DTNBP1Q96EV8 351 aa0.87□□□□□ -2.27
SCN1A-208ENST00000625916 COQ2Q96H96 371 aa0.87□□□□□ -2.27
SCN1A-208ENST00000625916 C16orf45Q96MC5 204 aaPredicted RBP0.87□□□□□ -2.27
SCN1A-208ENST00000625916 FMO2Q99518 471 aa0.87□□□□□ -2.27
SCN1A-208ENST00000625916 TRIM62Q9BVG3 475 aa0.87□□□□□ -2.27
SCN1A-208ENST00000625916 OR52D1Q9H346 318 aa0.87□□□□□ -2.27
SCN1A-208ENST00000625916 GORASP2Q9H8Y8 452 aa0.87□□□□□ -2.27
SCN1A-208ENST00000625916 KCNJ16Q9NPI9 418 aa0.87□□□□□ -2.27
SCN1A-208ENST00000625916 TRMT112Q9UI30 125 aaKnown RBP0.87□□□□□ -2.27
SCN1A-208ENST00000625916 CBY1Q9Y3M2 126 aa0.87□□□□□ -2.27
SCN1A-208ENST00000625916 DOCK8Q8NF50 2099 aa0.87□□□□□ -2.27
SCN1A-208ENST00000625916 A0A1B0GVL5 298 aa0.86□□□□□ -2.27
SCN1A-208ENST00000625916 A0A1B0GW55 424 aa0.86□□□□□ -2.27
SCN1A-208ENST00000625916 A0A1W2PNN7 141 aa0.86□□□□□ -2.27
SCN1A-208ENST00000625916 TMEM120BA0PK00 339 aa0.86□□□□□ -2.27
SCN1A-208ENST00000625916 OR6C74A6NCV1 312 aa0.86□□□□□ -2.27
SCN1A-208ENST00000625916 PCP4L1A6NKN8 68 aa0.86□□□□□ -2.27
SCN1A-208ENST00000625916 BTNL10A8MVZ5 291 aa0.86□□□□□ -2.27
SCN1A-208ENST00000625916 H0YJW9 148 aa0.86□□□□□ -2.27
SCN1A-208ENST00000625916 ANGPT2O15123 496 aa0.86□□□□□ -2.27
SCN1A-208ENST00000625916 SOCS1O15524 211 aa0.86□□□□□ -2.27
SCN1A-208ENST00000625916 CHST10O43529 356 aa0.86□□□□□ -2.27
SCN1A-208ENST00000625916 NOL3O60936 208 aaKnown RBP0.86□□□□□ -2.27
SCN1A-208ENST00000625916 C1orf105O95561 183 aa0.86□□□□□ -2.27
SCN1A-208ENST00000625916 FGGP02679 453 aa0.86□□□□□ -2.27
SCN1A-208ENST00000625916 HEXBP07686 556 aa0.86□□□□□ -2.27
SCN1A-208ENST00000625916 OR8U9P0C7N5 309 aa0.86□□□□□ -2.27
SCN1A-208ENST00000625916 DUX4L2P0CJ85 424 aa0.86□□□□□ -2.27
SCN1A-208ENST00000625916 DUX4L3P0CJ86 424 aa0.86□□□□□ -2.27
SCN1A-208ENST00000625916 DUX4L5P0CJ88 424 aa0.86□□□□□ -2.27
SCN1A-208ENST00000625916 DUX4L6P0CJ89 424 aa0.86□□□□□ -2.27
SCN1A-208ENST00000625916 DUX4L7P0CJ90 424 aa0.86□□□□□ -2.27
SCN1A-208ENST00000625916 ME2P23368 584 aa0.86□□□□□ -2.27
SCN1A-208ENST00000625916 F2RP25116 425 aa0.86□□□□□ -2.27
SCN1A-208ENST00000625916 CEACAM3P40198 252 aa0.86□□□□□ -2.27
SCN1A-208ENST00000625916 VSX2P58304 361 aaPredicted RBP0.86□□□□□ -2.27
SCN1A-208ENST00000625916 POLR2FP61218 127 aaKnown RBP0.86□□□□□ -2.27
SCN1A-208ENST00000625916 RBX1P62877 108 aa0.86□□□□□ -2.27
SCN1A-208ENST00000625916 ELP6Q0PNE2 266 aa0.86□□□□□ -2.27
SCN1A-208ENST00000625916 CDC37Q16543 378 aaPredicted RBP0.86□□□□□ -2.27
SCN1A-208ENST00000625916 IMMTQ16891 758 aaKnown RBP0.86□□□□□ -2.27
SCN1A-208ENST00000625916 UQCC3Q6UW78 93 aa0.86□□□□□ -2.27
SCN1A-208ENST00000625916 CCDC73Q6ZRK6 1079 aa0.86□□□□□ -2.27
SCN1A-208ENST00000625916 OR5M1Q8NGP8 315 aa0.86□□□□□ -2.27
SCN1A-208ENST00000625916 OR2T3Q8NH03 318 aa0.86□□□□□ -2.27
SCN1A-208ENST00000625916 RHEBL1Q8TAI7 183 aa0.86□□□□□ -2.27
SCN1A-208ENST00000625916 PTX4Q96A99 478 aa0.86□□□□□ -2.27
SCN1A-208ENST00000625916 SEH1LQ96EE3 360 aa0.86□□□□□ -2.27
SCN1A-208ENST00000625916 DNAJC1Q96KC8 554 aaKnown RBP0.86□□□□□ -2.27
SCN1A-208ENST00000625916 SERPINB12Q96P63 405 aa0.86□□□□□ -2.27
SCN1A-208ENST00000625916 PSKH2Q96QS6 385 aa0.86□□□□□ -2.27
SCN1A-208ENST00000625916 SHANK2-AS3Q9BTD1 123 aa0.86□□□□□ -2.27
SCN1A-208ENST00000625916 TMEM43Q9BTV4 400 aa0.86□□□□□ -2.27
SCN1A-208ENST00000625916 ANGPTL4Q9BY76 406 aa0.86□□□□□ -2.27
SCN1A-208ENST00000625916 LIN28AQ9H9Z2 209 aaKnown RBP0.86□□□□□ -2.27
SCN1A-208ENST00000625916 SLC38A10Q9HBR0 1119 aa0.86□□□□□ -2.27
SCN1A-208ENST00000625916 HPF1Q9NWY4 346 aa0.86□□□□□ -2.27
SCN1A-208ENST00000625916 DUX4Q9UBX2 424 aa0.86□□□□□ -2.27
SCN1A-208ENST00000625916 ZNF639Q9UID6 485 aa0.86□□□□□ -2.27
SCN1A-208ENST00000625916 ATP6V0A2Q9Y487 856 aa0.86□□□□□ -2.27
SCN1A-208ENST00000625916 DDX49Q9Y6V7 483 aaKnown RBP0.86□□□□□ -2.27
SCN1A-208ENST00000625916 TRAV19A0A0A6YYK7 116 aa0.85□□□□□ -2.27
SCN1A-208ENST00000625916 C5orf63A6NC05 138 aa0.85□□□□□ -2.27
SCN1A-208ENST00000625916 GPR89AB7ZAQ6 455 aa0.85□□□□□ -2.27
SCN1A-208ENST00000625916 PPP1R2P9O14990 202 aa0.85□□□□□ -2.27
SCN1A-208ENST00000625916 MAGEB3O15480 346 aa0.85□□□□□ -2.27
SCN1A-208ENST00000625916 ZNF208O43345 1280 aa0.85□□□□□ -2.27
SCN1A-208ENST00000625916 PSTPIP1O43586 416 aa0.85□□□□□ -2.27
SCN1A-208ENST00000625916 TIMM8AO60220 97 aaPredicted RBP0.85□□□□□ -2.27
SCN1A-208ENST00000625916 DPM1O60762 260 aa0.85□□□□□ -2.27
SCN1A-208ENST00000625916 REM1O75628 298 aa0.85□□□□□ -2.27
SCN1A-208ENST00000625916 H6PDO95479 791 aa0.85□□□□□ -2.27
SCN1A-208ENST00000625916 CYB5R3P00387 301 aaPredicted RBP0.85□□□□□ -2.27
SCN1A-208ENST00000625916 GPR89BP0CG08 455 aa0.85□□□□□ -2.27
SCN1A-208ENST00000625916 OR5H8P0DN80 308 aa0.85□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms