RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 SNRPD2P62316 118 aaKnown RBP3.6□□□□□ -1.83
LINC00540-201ENST00000611481 RELAQ04206 551 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 LRRC63Q05C16 580 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 PRDX1Q06830 199 aaKnown RBP3.6□□□□□ -1.83
LINC00540-201ENST00000611481 RASGEF1BQ0VAM2 473 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 PNRC1Q12796 327 aaPredicted RBP3.6□□□□□ -1.83
LINC00540-201ENST00000611481 SELPLGQ14242 412 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 HERC3Q15034 1050 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 ZNF311Q5JNZ3 666 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 GRTP1Q5TC63 336 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 TIGD3Q6B0B8 471 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 ADNP2Q6IQ32 1131 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 UGT3A1Q6NUS8 523 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 NIPAL3Q6P499 406 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 CBLN3Q6UW01 205 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 TMEM64Q6YI46 380 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 SHFQ7M4L6 423 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 ERASQ7Z444 233 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 CROCCP3Q8IVE0 287 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 OR1J4Q8NGS1 313 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 OR13C4Q8NGS5 318 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 OR14A16Q8NHC5 309 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 THAP6Q8TBB0 222 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 TMEM163Q8TC26 289 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 CCDC107Q8WV48 283 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 SKA2Q8WVK7 121 aaPredicted RBP3.6□□□□□ -1.83
LINC00540-201ENST00000611481 DNAJA4Q8WW22 397 aaPredicted RBP3.6□□□□□ -1.83
LINC00540-201ENST00000611481 TMED6Q8WW62 240 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 DAZLQ92904 295 aaKnown RBP3.6□□□□□ -1.83
LINC00540-201ENST00000611481 RFT1Q96AA3 541 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 THOC1Q96FV9 657 aaKnown RBP3.6□□□□□ -1.83
LINC00540-201ENST00000611481 PRAP1Q96NZ9 151 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 RAB40CQ96S21 281 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 HBEGFQ99075 208 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 MTERF1Q99551 399 aaKnown RBP3.6□□□□□ -1.83
LINC00540-201ENST00000611481 GAL3ST1Q99999 423 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 PAIP2Q9BPZ3 127 aaKnown RBP3.6□□□□□ -1.83
LINC00540-201ENST00000611481 SIKE1Q9BRV8 207 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 OR2B2Q9GZK3 357 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 SLC25A51Q9H1U9 297 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 DCLRE1BQ9H816 532 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 EVA1AQ9H8M9 152 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 Q9H8V8 135 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 MARCH7Q9H992 704 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 SIX2Q9NPC8 291 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 RDH8Q9NYR8 311 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 TAS2R16Q9NYV7 291 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 SPATA7Q9P0W8 599 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 RNF14Q9UBS8 474 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 FOXJ3Q9UPW0 622 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 ERVK-19Q9WJR5 959 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 WDR83OSQ9Y284 106 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 OR10H1Q9Y4A9 318 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 MMACHCQ9Y4U1 282 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 SLC22A7Q9Y694 548 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 COMMD3-BMI1R4GMX3 469 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 LOC285095A0A1B0GVY8 99 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 C17orf105B2RV13 164 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 LYNX1G3V0Z9 82 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 J3QLI3 93 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 BMPR1BO00238 502 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 TP53I11O14683 189 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 SLC22A2O15244 555 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 ZNF264O43296 627 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 PRKRAO75569 313 aaKnown RBP3.59□□□□□ -1.83
LINC00540-201ENST00000611481 GCM2O75603 506 aaPredicted RBP3.59□□□□□ -1.83
LINC00540-201ENST00000611481 MPZL1O95297 269 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 SYNGR4O95473 234 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 C1orf105O95561 183 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 OTCP00480 354 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 UBTFL6P0CB48 400 aaPredicted RBP3.59□□□□□ -1.83
LINC00540-201ENST00000611481 LYNX1P0DP58 116 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 ZNF44P15621 663 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 CHRNB2P17787 502 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 CCR7P32248 378 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 COILP38432 576 aaPredicted RBP3.59□□□□□ -1.83
LINC00540-201ENST00000611481 PTGFRP43088 359 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 ZNF83P51522 516 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 HNRNPH2P55795 449 aaKnown RBP3.59□□□□□ -1.83
LINC00540-201ENST00000611481 CLDN20P56880 219 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 RPS15AP62244 130 aaKnown RBP3.59□□□□□ -1.83
LINC00540-201ENST00000611481 HERV-K104P63124 156 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 SKP1P63208 163 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 RPP38P78345 283 aaKnown RBP3.59□□□□□ -1.83
LINC00540-201ENST00000611481 EXOC3L4Q17RC7 722 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 AGKQ53H12 422 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 CARD17Q5XLA6 110 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 NCBP2-AS2Q69YL0 99 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 HIST2H2AA3Q6FI13 130 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 TRIM40Q6P9F5 258 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 PACS1Q6VY07 963 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 Q6ZSV7 163 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 BHLHA15Q7RTS1 189 aaPredicted RBP3.59□□□□□ -1.83
LINC00540-201ENST00000611481 ZNF367Q7RTV3 350 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 CARM1Q86X55 608 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 DND1Q8IYX4 353 aaKnown RBP3.59□□□□□ -1.83
LINC00540-201ENST00000611481 ZNF786Q8N393 782 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 ARFGAP2Q8N6H7 521 aa3.59□□□□□ -1.83
LINC00540-201ENST00000611481 C1orf52Q8N6N3 182 aaKnown RBP3.59□□□□□ -1.83
LINC00540-201ENST00000611481 MORN4Q8NDC4 146 aa3.59□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms