RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 OR52E2Q8NGJ4 325 aa16.73■□□□□ 0.27
UPF1-212ENST00000601689 OR4K13Q8NH42 304 aa16.73■□□□□ 0.27
UPF1-212ENST00000601689 TEX47Q8TBZ9 253 aa16.73■□□□□ 0.27
UPF1-212ENST00000601689 C11orf40Q8WZ69 217 aa16.73■□□□□ 0.27
UPF1-212ENST00000601689 C18orf12Q96KH6 178 aa16.73■□□□□ 0.27
UPF1-212ENST00000601689 NMNAT3Q96T66 252 aa16.73■□□□□ 0.27
UPF1-212ENST00000601689 RHNO1Q9BSD3 238 aa16.73■□□□□ 0.27
UPF1-212ENST00000601689 CDADC1Q9BWV3 514 aa16.73■□□□□ 0.27
UPF1-212ENST00000601689 TSSK6Q9BXA6 273 aa16.73■□□□□ 0.27
UPF1-212ENST00000601689 NUAK2Q9H093 628 aa16.73■□□□□ 0.27
UPF1-212ENST00000601689 EGLN3Q9H6Z9 239 aa16.73■□□□□ 0.27
UPF1-212ENST00000601689 SRA1Q9HD15 236 aaKnown RBP16.73■□□□□ 0.27
UPF1-212ENST00000601689 PDP1Q9P0J1 537 aaPredicted RBP16.73■□□□□ 0.27
UPF1-212ENST00000601689 DNAJB9Q9UBS3 223 aa16.73■□□□□ 0.27
UPF1-212ENST00000601689 COA3Q9Y2R0 106 aaPredicted RBP16.73■□□□□ 0.27
UPF1-212ENST00000601689 ITPR3Q14573 2671 aa16.73■□□□□ 0.27
UPF1-212ENST00000601689 F8P00451 2351 aa16.73■□□□□ 0.27
UPF1-212ENST00000601689 H3BN98 237 aa16.72■□□□□ 0.27
UPF1-212ENST00000601689 HLA-DQA2P01906 255 aa16.72■□□□□ 0.27
UPF1-212ENST00000601689 LCKP06239 509 aa16.72■□□□□ 0.27
UPF1-212ENST00000601689 CSF3P09919 207 aa16.72■□□□□ 0.27
UPF1-212ENST00000601689 APEX1P27695 318 aaKnown RBP16.72■□□□□ 0.27
UPF1-212ENST00000601689 PPOXP50336 477 aa16.72■□□□□ 0.27
UPF1-212ENST00000601689 EFNA4P52798 201 aa16.72■□□□□ 0.27
UPF1-212ENST00000601689 PSG4Q00888 419 aa16.72■□□□□ 0.27
UPF1-212ENST00000601689 ZNF770Q6IQ21 691 aaPredicted RBP16.72■□□□□ 0.27
UPF1-212ENST00000601689 PTCHD4Q6ZW05 846 aa16.72■□□□□ 0.27
UPF1-212ENST00000601689 MRPL24Q96A35 216 aaKnown RBP16.72■□□□□ 0.27
UPF1-212ENST00000601689 ZNF416Q9BWM5 594 aa16.72■□□□□ 0.27
UPF1-212ENST00000601689 OR2H1Q9GZK4 316 aa16.72■□□□□ 0.27
UPF1-212ENST00000601689 MS4A5Q9H3V2 200 aa16.72■□□□□ 0.27
UPF1-212ENST00000601689 ELOVL3Q9HB03 270 aa16.72■□□□□ 0.27
UPF1-212ENST00000601689 KLHL21Q9UJP4 597 aa16.72■□□□□ 0.27
UPF1-212ENST00000601689 ARFGEF3Q5TH69 2177 aa16.71■□□□□ 0.27
UPF1-212ENST00000601689 C5orf49A4QMS7 147 aa16.71■□□□□ 0.27
UPF1-212ENST00000601689 IGHV4-39P01824 125 aa16.71■□□□□ 0.27
UPF1-212ENST00000601689 MT-ND5P03915 603 aa16.71■□□□□ 0.27
UPF1-212ENST00000601689 COX5BP10606 129 aa16.71■□□□□ 0.27
UPF1-212ENST00000601689 ANXA8P13928 327 aa16.71■□□□□ 0.27
UPF1-212ENST00000601689 UCP2P55851 309 aa16.71■□□□□ 0.27
UPF1-212ENST00000601689 KHDRBS1Q07666 443 aaKnown RBP eCLIP16.71■□□□□ 0.27
UPF1-212ENST00000601689 SLC35F1Q5T1Q4 408 aa16.71■□□□□ 0.27
UPF1-212ENST00000601689 C10orf67Q8IYJ2 551 aa16.71■□□□□ 0.27
UPF1-212ENST00000601689 PAPD5Q8NDF8 572 aaKnown RBP16.71■□□□□ 0.27
UPF1-212ENST00000601689 ICA1LQ8NDH6 482 aa16.71■□□□□ 0.27
UPF1-212ENST00000601689 SDR9C7Q8NEX9 313 aa16.71■□□□□ 0.27
UPF1-212ENST00000601689 OR2T4Q8NH00 348 aa16.71■□□□□ 0.27
UPF1-212ENST00000601689 AKR7LQ8NHP1 331 aa16.71■□□□□ 0.27
UPF1-212ENST00000601689 FEVQ99581 238 aa16.71■□□□□ 0.27
UPF1-212ENST00000601689 RACGAP1Q9H0H5 632 aa16.71■□□□□ 0.27
UPF1-212ENST00000601689 MYOZ1Q9NP98 299 aaPredicted RBP16.71■□□□□ 0.27
UPF1-212ENST00000601689 RPRD1BQ9NQG5 326 aaKnown RBP16.71■□□□□ 0.27
UPF1-212ENST00000601689 PLEK2Q9NYT0 353 aa16.71■□□□□ 0.27
UPF1-212ENST00000601689 KIF17Q9P2E2 1029 aa16.71■□□□□ 0.27
UPF1-212ENST00000601689 DUSP13Q9UII6 198 aa16.71■□□□□ 0.27
UPF1-212ENST00000601689 GDF2Q9UK05 429 aaPredicted RBP16.71■□□□□ 0.27
UPF1-212ENST00000601689 B9D1Q9UPM9 204 aa16.71■□□□□ 0.27
UPF1-212ENST00000601689 A0A1W2PPW3 197 aa16.7■□□□□ 0.26
UPF1-212ENST00000601689 SGCEO43556 437 aa16.7■□□□□ 0.26
UPF1-212ENST00000601689 INHBBP09529 407 aa16.7■□□□□ 0.26
UPF1-212ENST00000601689 FAM157BP0CG42 384 aa16.7■□□□□ 0.26
UPF1-212ENST00000601689 FCGR1AP12314 374 aa16.7■□□□□ 0.26
UPF1-212ENST00000601689 CCL2P13500 99 aa16.7■□□□□ 0.26
UPF1-212ENST00000601689 GCH1P30793 250 aa16.7■□□□□ 0.26
UPF1-212ENST00000601689 CD300LDQ6UXZ3 194 aa16.7■□□□□ 0.26
UPF1-212ENST00000601689 BIVMQ86UB2 503 aa16.7■□□□□ 0.26
UPF1-212ENST00000601689 KRTAP1-3Q8IUG1 177 aa16.7■□□□□ 0.26
UPF1-212ENST00000601689 SVOPLQ8N434 492 aa16.7■□□□□ 0.26
UPF1-212ENST00000601689 GJC3Q8NFK1 279 aa16.7■□□□□ 0.26
UPF1-212ENST00000601689 OR2AJ1Q8NGZ0 328 aa16.7■□□□□ 0.26
UPF1-212ENST00000601689 SNX33Q8WV41 574 aa16.7■□□□□ 0.26
UPF1-212ENST00000601689 NEU4Q8WWR8 484 aaPredicted RBP16.7■□□□□ 0.26
UPF1-212ENST00000601689 DNAJC9Q8WXX5 260 aa16.7■□□□□ 0.26
UPF1-212ENST00000601689 NRBF2Q96F24 287 aa16.7■□□□□ 0.26
UPF1-212ENST00000601689 EMC7Q9NPA0 242 aa16.7■□□□□ 0.26
UPF1-212ENST00000601689 CELSR1Q9NYQ6 3014 aa16.7■□□□□ 0.26
UPF1-212ENST00000601689 RIIAD1A6NNX1 92 aa16.69■□□□□ 0.26
UPF1-212ENST00000601689 H7C1Q1 480 aa16.69■□□□□ 0.26
UPF1-212ENST00000601689 M0R233 179 aa16.69■□□□□ 0.26
UPF1-212ENST00000601689 SYNGR3O43761 229 aa16.69■□□□□ 0.26
UPF1-212ENST00000601689 DOK2O60496 412 aa16.69■□□□□ 0.26
UPF1-212ENST00000601689 F12P00748 615 aaPredicted RBP16.69■□□□□ 0.26
UPF1-212ENST00000601689 ZNF823P16415 610 aa16.69■□□□□ 0.26
UPF1-212ENST00000601689 ZNF3P17036 446 aa16.69■□□□□ 0.26
UPF1-212ENST00000601689 ERFP50548 548 aa16.69■□□□□ 0.26
UPF1-212ENST00000601689 ENDOGQ14249 297 aaKnown RBP16.69■□□□□ 0.26
UPF1-212ENST00000601689 MST1LQ2TV78 715 aa16.69■□□□□ 0.26
UPF1-212ENST00000601689 LNX2Q8N448 690 aa16.69■□□□□ 0.26
UPF1-212ENST00000601689 ATG16L2Q8NAA4 619 aa16.69■□□□□ 0.26
UPF1-212ENST00000601689 CPEB3Q8NE35 698 aaKnown RBP16.69■□□□□ 0.26
UPF1-212ENST00000601689 OR1J1Q8NGS3 322 aa16.69■□□□□ 0.26
UPF1-212ENST00000601689 SYNPRQ8TBG9 265 aa16.69■□□□□ 0.26
UPF1-212ENST00000601689 COG8Q96MW5 612 aa16.69■□□□□ 0.26
UPF1-212ENST00000601689 FOXN4Q96NZ1 517 aa16.69■□□□□ 0.26
UPF1-212ENST00000601689 OR51B6Q9H340 312 aa16.69■□□□□ 0.26
UPF1-212ENST00000601689 VNN3Q9NY84 501 aa16.69■□□□□ 0.26
UPF1-212ENST00000601689 SLCO1C1Q9NYB5 712 aa16.69■□□□□ 0.26
UPF1-212ENST00000601689 BHLHE40O14503 412 aa16.68■□□□□ 0.26
UPF1-212ENST00000601689 GPRIN2O60269 458 aa16.68■□□□□ 0.26
UPF1-212ENST00000601689 SOX14O95416 240 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms