RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 ZNF774Q6NX45 483 aa11.14□□□□□ -0.63
LIG1-212ENST00000596549 CPLX4Q7Z7G2 160 aa11.14□□□□□ -0.63
LIG1-212ENST00000596549 SLC25A40Q8TBP6 338 aa11.14□□□□□ -0.63
LIG1-212ENST00000596549 RDH5Q92781 318 aa11.14□□□□□ -0.63
LIG1-212ENST00000596549 C1orf159Q96HA4 380 aa11.14□□□□□ -0.63
LIG1-212ENST00000596549 RBP7Q96R05 134 aa11.14□□□□□ -0.63
LIG1-212ENST00000596549 RACGAP1Q9H0H5 632 aa11.14□□□□□ -0.63
LIG1-212ENST00000596549 KCNN2Q9H2S1 579 aa11.14□□□□□ -0.63
LIG1-212ENST00000596549 GORASP2Q9H8Y8 452 aa11.14□□□□□ -0.63
LIG1-212ENST00000596549 EMC7Q9NPA0 242 aa11.14□□□□□ -0.63
LIG1-212ENST00000596549 NRIP3Q9NQ35 241 aa11.14□□□□□ -0.63
LIG1-212ENST00000596549 GRHPRQ9UBQ7 328 aa11.14□□□□□ -0.63
LIG1-212ENST00000596549 LPAR3Q9UBY5 353 aa11.14□□□□□ -0.63
LIG1-212ENST00000596549 CD300AQ9UGN4 299 aa11.14□□□□□ -0.63
LIG1-212ENST00000596549 IL20RAQ9UHF4 553 aa11.14□□□□□ -0.63
LIG1-212ENST00000596549 MAGEL2Q9UJ55 1249 aa11.14□□□□□ -0.63
LIG1-212ENST00000596549 PRSS37A4D1T9 235 aa11.13□□□□□ -0.63
LIG1-212ENST00000596549 PTP4A3O75365 173 aa11.13□□□□□ -0.63
LIG1-212ENST00000596549 TGFAP01135 160 aa11.13□□□□□ -0.63
LIG1-212ENST00000596549 IGHV3-13P01766 116 aa11.13□□□□□ -0.63
LIG1-212ENST00000596549 RAD52P43351 418 aa11.13□□□□□ -0.63
LIG1-212ENST00000596549 GPR6P46095 362 aaPredicted RBP11.13□□□□□ -0.63
LIG1-212ENST00000596549 GDI2P50395 445 aaKnown RBP11.13□□□□□ -0.63
LIG1-212ENST00000596549 PTCHD4Q6ZW05 846 aa11.13□□□□□ -0.63
LIG1-212ENST00000596549 PIGWQ7Z7B1 504 aa11.13□□□□□ -0.63
LIG1-212ENST00000596549 OR52J3Q8NH60 311 aa11.13□□□□□ -0.63
LIG1-212ENST00000596549 CLDND2Q8NHS1 167 aa11.13□□□□□ -0.63
LIG1-212ENST00000596549 C11orf40Q8WZ69 217 aa11.13□□□□□ -0.63
LIG1-212ENST00000596549 MARS2Q96GW9 593 aaKnown RBP11.13□□□□□ -0.63
LIG1-212ENST00000596549 BEX2Q9BXY8 128 aa11.13□□□□□ -0.63
LIG1-212ENST00000596549 OR2J1Q9GZK6 312 aa11.13□□□□□ -0.63
LIG1-212ENST00000596549 SHARPINQ9H0F6 387 aa11.13□□□□□ -0.63
LIG1-212ENST00000596549 SYT4Q9H2B2 425 aa11.13□□□□□ -0.63
LIG1-212ENST00000596549 LRMDAQ9H2I8 198 aa11.13□□□□□ -0.63
LIG1-212ENST00000596549 NARFLQ9H6Q4 476 aa11.13□□□□□ -0.63
LIG1-212ENST00000596549 HINT3Q9NQE9 182 aaKnown RBP11.13□□□□□ -0.63
LIG1-212ENST00000596549 TAGLN3Q9UI15 199 aa11.13□□□□□ -0.63
LIG1-212ENST00000596549 MXRA5Q9NR99 2828 aa11.12□□□□□ -0.63
LIG1-212ENST00000596549 ZSCAN5BA6NJL1 495 aa11.12□□□□□ -0.63
LIG1-212ENST00000596549 FAM157AC9JC47 383 aa11.12□□□□□ -0.63
LIG1-212ENST00000596549 SOCS2O14508 198 aa11.12□□□□□ -0.63
LIG1-212ENST00000596549 DOK2O60496 412 aa11.12□□□□□ -0.63
LIG1-212ENST00000596549 NGFP01138 241 aa11.12□□□□□ -0.63
LIG1-212ENST00000596549 MMP15P51511 669 aa11.12□□□□□ -0.63
LIG1-212ENST00000596549 CCL8P80075 99 aa11.12□□□□□ -0.63
LIG1-212ENST00000596549 MRPS11P82912 194 aaKnown RBP11.12□□□□□ -0.63
LIG1-212ENST00000596549 SPIBQ01892 262 aa11.12□□□□□ -0.63
LIG1-212ENST00000596549 DBPQ10586 325 aaPredicted RBP11.12□□□□□ -0.63
LIG1-212ENST00000596549 HNRNPA0Q13151 305 aaKnown RBP11.12□□□□□ -0.63
LIG1-212ENST00000596549 CR1LQ2VPA4 569 aa11.12□□□□□ -0.63
LIG1-212ENST00000596549 RRM2BQ7LG56 351 aa11.12□□□□□ -0.63
LIG1-212ENST00000596549 PHC2Q8IXK0 858 aa11.12□□□□□ -0.63
LIG1-212ENST00000596549 ABHD4Q8TB40 342 aa11.12□□□□□ -0.63
LIG1-212ENST00000596549 SNX33Q8WV41 574 aa11.12□□□□□ -0.63
LIG1-212ENST00000596549 HPS1Q92902 700 aa11.12□□□□□ -0.63
LIG1-212ENST00000596549 PYURFQ96I23 114 aa11.12□□□□□ -0.63
LIG1-212ENST00000596549 POFUT1Q9H488 388 aa11.12□□□□□ -0.63
LIG1-212ENST00000596549 SLCO1C1Q9NYB5 712 aa11.12□□□□□ -0.63
LIG1-212ENST00000596549 VSX1Q9NZR4 365 aaPredicted RBP11.12□□□□□ -0.63
LIG1-212ENST00000596549 ARL2BPQ9Y2Y0 163 aa11.12□□□□□ -0.63
LIG1-212ENST00000596549 FAM32AQ9Y421 112 aaKnown RBP11.12□□□□□ -0.63
LIG1-212ENST00000596549 TIMM10BQ9Y5J6 103 aa11.12□□□□□ -0.63
LIG1-212ENST00000596549 CACNG2Q9Y698 323 aa11.12□□□□□ -0.63
LIG1-212ENST00000596549 DCTN6O00399 190 aa11.11□□□□□ -0.63
LIG1-212ENST00000596549 XKRYO14609 159 aa11.11□□□□□ -0.63
LIG1-212ENST00000596549 PHF1O43189 567 aaPredicted RBP11.11□□□□□ -0.63
LIG1-212ENST00000596549 CDC14BO60729 498 aa11.11□□□□□ -0.63
LIG1-212ENST00000596549 GADD45GO95257 159 aa11.11□□□□□ -0.63
LIG1-212ENST00000596549 MPZL1O95297 269 aa11.11□□□□□ -0.63
LIG1-212ENST00000596549 PPP1R3DO95685 299 aa11.11□□□□□ -0.63
LIG1-212ENST00000596549 GPANK1O95872 356 aa11.11□□□□□ -0.63
LIG1-212ENST00000596549 TXNDC12O95881 172 aa11.11□□□□□ -0.63
LIG1-212ENST00000596549 IFNA2P01563 188 aa11.11□□□□□ -0.63
LIG1-212ENST00000596549 IGHV1-46P01743 117 aa11.11□□□□□ -0.63
LIG1-212ENST00000596549 SRD5A1P18405 259 aa11.11□□□□□ -0.63
LIG1-212ENST00000596549 ATP6V1B2P21281 511 aa11.11□□□□□ -0.63
LIG1-212ENST00000596549 PPP1CBP62140 327 aa11.11□□□□□ -0.63
LIG1-212ENST00000596549 SPRNQ5BIV9 151 aa11.11□□□□□ -0.63
LIG1-212ENST00000596549 SAMD4BQ5PRF9 694 aaKnown RBP11.11□□□□□ -0.63
LIG1-212ENST00000596549 MBNL2Q5VZF2 373 aaKnown RBP11.11□□□□□ -0.63
LIG1-212ENST00000596549 VASH1Q7L8A9 365 aaPredicted RBP11.11□□□□□ -0.63
LIG1-212ENST00000596549 ZER1Q7Z7L7 766 aa11.11□□□□□ -0.63
LIG1-212ENST00000596549 SYT9Q86SS6 491 aa11.11□□□□□ -0.63
LIG1-212ENST00000596549 DEFB107AQ8IZN7 70 aa11.11□□□□□ -0.63
LIG1-212ENST00000596549 LINC01356Q8N9X3 169 aa11.11□□□□□ -0.63
LIG1-212ENST00000596549 FANK1Q8TC84 345 aa11.11□□□□□ -0.63
LIG1-212ENST00000596549 KLF14Q8TD94 323 aaPredicted RBP11.11□□□□□ -0.63
LIG1-212ENST00000596549 NSMCE2Q96MF7 247 aa11.11□□□□□ -0.63
LIG1-212ENST00000596549 CDRT15Q96T59 188 aa11.11□□□□□ -0.63
LIG1-212ENST00000596549 NKIRAS2Q9NYR9 191 aa11.11□□□□□ -0.63
LIG1-212ENST00000596549 COA3Q9Y2R0 106 aaPredicted RBP11.11□□□□□ -0.63
LIG1-212ENST00000596549 IER3IP1Q9Y5U9 82 aa11.11□□□□□ -0.63
LIG1-212ENST00000596549 DYSFO75923 2080 aa11.1□□□□□ -0.63
LIG1-212ENST00000596549 UNC119BA6NIH7 251 aa11.1□□□□□ -0.63
LIG1-212ENST00000596549 C12orf71A8MTZ7 269 aa11.1□□□□□ -0.63
LIG1-212ENST00000596549 AHCYL1O43865 530 aa11.1□□□□□ -0.63
LIG1-212ENST00000596549 SLC16A7O60669 478 aa11.1□□□□□ -0.63
LIG1-212ENST00000596549 DCTN3O75935 186 aa11.1□□□□□ -0.63
LIG1-212ENST00000596549 FABP3P05413 133 aa11.1□□□□□ -0.63
LIG1-212ENST00000596549 GAAP10253 952 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms