RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 PRSS41Q7RTY9 318 aa5.34□□□□□ -1.55
VPS53-212ENST00000572259 PAGE2Q7Z2X7 111 aa5.34□□□□□ -1.55
VPS53-212ENST00000572259 DPY19L4Q7Z388 723 aa5.34□□□□□ -1.55
VPS53-212ENST00000572259 SATL1Q86VE3 508 aa5.34□□□□□ -1.55
VPS53-212ENST00000572259 COMMD2Q86X83 199 aa5.34□□□□□ -1.55
VPS53-212ENST00000572259 RBM45Q8IUH3 476 aaKnown RBP5.34□□□□□ -1.55
VPS53-212ENST00000572259 HORMAD2Q8N7B1 307 aa5.34□□□□□ -1.55
VPS53-212ENST00000572259 OR4A15Q8NGL6 344 aa5.34□□□□□ -1.55
VPS53-212ENST00000572259 MARCH1Q8TCQ1 289 aa5.34□□□□□ -1.55
VPS53-212ENST00000572259 ZNF473Q8WTR7 871 aaKnown RBP5.34□□□□□ -1.55
VPS53-212ENST00000572259 RPL3LQ92901 407 aaKnown RBP5.34□□□□□ -1.55
VPS53-212ENST00000572259 PNPLA2Q96AD5 504 aa5.34□□□□□ -1.55
VPS53-212ENST00000572259 C8orf44Q96CB5 159 aa5.34□□□□□ -1.55
VPS53-212ENST00000572259 SLC25A36Q96CQ1 311 aa5.34□□□□□ -1.55
VPS53-212ENST00000572259 SH3YL1Q96HL8 342 aaPredicted RBP5.34□□□□□ -1.55
VPS53-212ENST00000572259 ZNF354BQ96LW1 612 aa5.34□□□□□ -1.55
VPS53-212ENST00000572259 F2RL3Q96RI0 385 aa5.34□□□□□ -1.55
VPS53-212ENST00000572259 S1PR3Q99500 378 aa5.34□□□□□ -1.55
VPS53-212ENST00000572259 SERPINI1Q99574 410 aa5.34□□□□□ -1.55
VPS53-212ENST00000572259 NUDT9Q9BW91 350 aa5.34□□□□□ -1.55
VPS53-212ENST00000572259 ERVK-6Q9BXR3 956 aa5.34□□□□□ -1.55
VPS53-212ENST00000572259 MS4A8Q9BY19 250 aa5.34□□□□□ -1.55
VPS53-212ENST00000572259 PARD6BQ9BYG5 372 aa5.34□□□□□ -1.55
VPS53-212ENST00000572259 SLC29A3Q9BZD2 475 aa5.34□□□□□ -1.55
VPS53-212ENST00000572259 ILKAPQ9H0C8 392 aaPredicted RBP5.34□□□□□ -1.55
VPS53-212ENST00000572259 RAB1BQ9H0U4 201 aa5.34□□□□□ -1.55
VPS53-212ENST00000572259 KLHL31Q9H511 634 aa5.34□□□□□ -1.55
VPS53-212ENST00000572259 KAT8Q9H7Z6 458 aaKnown RBP5.34□□□□□ -1.55
VPS53-212ENST00000572259 PRTFDC1Q9NRG1 225 aa5.34□□□□□ -1.55
VPS53-212ENST00000572259 ZNF275Q9NSD4 429 aaPredicted RBP5.34□□□□□ -1.55
VPS53-212ENST00000572259 NKIRAS1Q9NYS0 192 aa5.34□□□□□ -1.55
VPS53-212ENST00000572259 STMN3Q9NZ72 180 aa5.34□□□□□ -1.55
VPS53-212ENST00000572259 B3GAT1Q9P2W7 334 aa5.34□□□□□ -1.55
VPS53-212ENST00000572259 PHF11Q9UIL8 331 aa5.34□□□□□ -1.55
VPS53-212ENST00000572259 ENPP5Q9UJA9 477 aa5.34□□□□□ -1.55
VPS53-212ENST00000572259 PITPNC1Q9UKF7 332 aa5.34□□□□□ -1.55
VPS53-212ENST00000572259 ABCG2Q9UNQ0 655 aa5.34□□□□□ -1.55
VPS53-212ENST00000572259 CFAP46Q8IYW2 2715 aa5.34□□□□□ -1.55
VPS53-212ENST00000572259 BAHCC1Q9P281 2608 aa5.34□□□□□ -1.55
VPS53-212ENST00000572259 SPTBN1Q01082 2364 aaKnown RBP5.34□□□□□ -1.56
VPS53-212ENST00000572259 PCNX1Q96RV3 2341 aa5.34□□□□□ -1.56
VPS53-212ENST00000572259 POLEQ07864 2286 aa5.34□□□□□ -1.56
VPS53-212ENST00000572259 DNAJC13O75165 2243 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 NINQ8N4C6 2090 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 TMEM120BA0PK00 339 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 GOLGA8RI6L899 631 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 CTNSO60931 367 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 CDC123O75794 336 aaPredicted RBP5.33□□□□□ -1.56
VPS53-212ENST00000572259 IFNA16P05015 189 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 COX6A1P12074 109 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 PLA2G2AP14555 144 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 HIST1H1TP22492 207 aaPredicted RBP5.33□□□□□ -1.56
VPS53-212ENST00000572259 IL32P24001 234 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 ATP5A1P25705 553 aaKnown RBP5.33□□□□□ -1.56
VPS53-212ENST00000572259 GCAP28676 217 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 HMOX2P30519 316 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 HNRNPH1P31943 449 aaKnown RBP5.33□□□□□ -1.56
VPS53-212ENST00000572259 SLCO1A2P46721 670 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 COMPP49747 757 aaPredicted RBP5.33□□□□□ -1.56
VPS53-212ENST00000572259 VSNL1P62760 191 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 ZNF33BQ06732 778 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 STX4Q12846 297 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 SLAMF1Q13291 335 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 MFAP5Q13361 173 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 HEPACAMQ14CZ8 416 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 SPHARQ15513 63 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 MAPRE2Q15555 327 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 SRSF7Q16629 238 aaKnown RBP eCLIP5.33□□□□□ -1.56
VPS53-212ENST00000572259 RGS21Q2M5E4 152 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 GGTA1PQ4G0N0 100 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 SFT2D3Q587I9 215 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 KHDRBS2Q5VWX1 349 aaKnown RBP5.33□□□□□ -1.56
VPS53-212ENST00000572259 KCTD18Q6PI47 426 aaPredicted RBP5.33□□□□□ -1.56
VPS53-212ENST00000572259 H2BFWTQ7Z2G1 175 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 ANKRD37Q7Z713 158 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 IQCKQ8N0W5 287 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 CA13Q8N1Q1 262 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 MUC20Q8N307 709 aaPredicted RBP5.33□□□□□ -1.56
VPS53-212ENST00000572259 FAM86B1Q8N7N1 296 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 ZNF781Q8N8C0 355 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 ACOT4Q8N9L9 421 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 OR7G2Q8NG99 324 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 OR7G1Q8NGA0 311 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 OR52I2Q8NH67 350 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 PRSS3P2Q8NHM4 247 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 RDH11Q8TC12 318 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 TMEM37Q8WXS4 190 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 TANKQ92844 425 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 DAZLQ92904 295 aaKnown RBP5.33□□□□□ -1.56
VPS53-212ENST00000572259 ASB9Q96DX5 294 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 TMEM19Q96HH6 336 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 RBM4BQ9BQ04 359 aaKnown RBP5.33□□□□□ -1.56
VPS53-212ENST00000572259 WDR77Q9BQA1 342 aaPredicted RBP5.33□□□□□ -1.56
VPS53-212ENST00000572259 RBM4Q9BWF3 364 aaKnown RBP5.33□□□□□ -1.56
VPS53-212ENST00000572259 SHCBP1LQ9BZQ2 653 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 AGPAT4Q9NRZ5 378 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 TMEM45AQ9NWC5 275 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 LYARQ9NX58 379 aaKnown RBP5.33□□□□□ -1.56
VPS53-212ENST00000572259 TMEM216Q9P0N5 145 aa5.33□□□□□ -1.56
VPS53-212ENST00000572259 SENP1Q9P0U3 644 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms