RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 FAM198BQ6UWH4 519 aa20.43■□□□□ 0.86
VPS53-211ENST00000571805 C16orf47Q6ZP98 133 aaPredicted RBP20.43■□□□□ 0.86
VPS53-211ENST00000571805 OR5M1Q8NGP8 315 aa20.43■□□□□ 0.86
VPS53-211ENST00000571805 ZNF576Q9H609 170 aa20.43■□□□□ 0.86
VPS53-211ENST00000571805 KIF26BQ2KJY2 2108 aa20.43■□□□□ 0.86
VPS53-211ENST00000571805 SOX1O00570 391 aaPredicted RBP20.43■□□□□ 0.86
VPS53-211ENST00000571805 DUX1O43812 170 aa20.43■□□□□ 0.86
VPS53-211ENST00000571805 RLN1P04808 185 aa20.43■□□□□ 0.86
VPS53-211ENST00000571805 SSBP1Q04837 148 aaKnown RBP20.43■□□□□ 0.86
VPS53-211ENST00000571805 C5orf46Q6UWT4 87 aa20.43■□□□□ 0.86
VPS53-211ENST00000571805 SHISA6Q6ZSJ9 500 aa20.43■□□□□ 0.86
VPS53-211ENST00000571805 WDFY1Q8IWB7 410 aa20.43■□□□□ 0.86
VPS53-211ENST00000571805 DVL3Q92997 716 aaPredicted RBP20.43■□□□□ 0.86
VPS53-211ENST00000571805 PNPLA2Q96AD5 504 aa20.43■□□□□ 0.86
VPS53-211ENST00000571805 ZNF501Q96CX3 271 aaPredicted RBP20.43■□□□□ 0.86
VPS53-211ENST00000571805 OPN4Q9UHM6 478 aa20.43■□□□□ 0.86
VPS53-211ENST00000571805 MRPS18BQ9Y676 258 aaKnown RBP20.43■□□□□ 0.86
VPS53-211ENST00000571805 UBE2QL1A1L167 161 aa20.42■□□□□ 0.86
VPS53-211ENST00000571805 L7N2F9 121 aa20.42■□□□□ 0.86
VPS53-211ENST00000571805 CD2P06729 351 aa20.42■□□□□ 0.86
VPS53-211ENST00000571805 RRASP10301 218 aa20.42■□□□□ 0.86
VPS53-211ENST00000571805 C4BPBP20851 252 aa20.42■□□□□ 0.86
VPS53-211ENST00000571805 HTR2CP28335 458 aa20.42■□□□□ 0.86
VPS53-211ENST00000571805 RNF4P78317 190 aa20.42■□□□□ 0.86
VPS53-211ENST00000571805 RIPPLY1Q0D2K3 151 aa20.42■□□□□ 0.86
VPS53-211ENST00000571805 GLYATL3Q5SZD4 288 aa20.42■□□□□ 0.86
VPS53-211ENST00000571805 MUC20Q8N307 709 aaPredicted RBP20.42■□□□□ 0.86
VPS53-211ENST00000571805 SLC26A10Q8NG04 563 aa20.42■□□□□ 0.86
VPS53-211ENST00000571805 SEH1LQ96EE3 360 aa20.42■□□□□ 0.86
VPS53-211ENST00000571805 PCED1AQ9H1Q7 454 aa20.42■□□□□ 0.86
VPS53-211ENST00000571805 G6PC2Q9NQR9 355 aa20.42■□□□□ 0.86
VPS53-211ENST00000571805 CKLFQ9UBR5 152 aa20.42■□□□□ 0.86
VPS53-211ENST00000571805 CA14Q9ULX7 337 aa20.42■□□□□ 0.86
VPS53-211ENST00000571805 R4GMQ9 66 aa20.42■□□□□ 0.86
VPS53-211ENST00000571805 IGHV3-20A0A0C4DH32 117 aa20.42■□□□□ 0.86
VPS53-211ENST00000571805 OR6C65A6NJZ3 312 aa20.42■□□□□ 0.86
VPS53-211ENST00000571805 SNAPC5O75971 98 aa20.42■□□□□ 0.86
VPS53-211ENST00000571805 SIX6O95475 246 aa20.42■□□□□ 0.86
VPS53-211ENST00000571805 FCER2P06734 321 aa20.42■□□□□ 0.86
VPS53-211ENST00000571805 MYF5P13349 255 aa20.42■□□□□ 0.86
VPS53-211ENST00000571805 RAB14P61106 215 aa20.42■□□□□ 0.86
VPS53-211ENST00000571805 TDGQ13569 410 aa20.42■□□□□ 0.86
VPS53-211ENST00000571805 NHLRC3Q5JS37 347 aa20.42■□□□□ 0.86
VPS53-211ENST00000571805 STEAP1BQ6NZ63 245 aa20.42■□□□□ 0.86
VPS53-211ENST00000571805 SUN5Q8TC36 379 aa20.42■□□□□ 0.86
VPS53-211ENST00000571805 SLC25A44Q96H78 314 aaPredicted RBP20.42■□□□□ 0.86
VPS53-211ENST00000571805 SLC22A11Q9NSA0 550 aa20.42■□□□□ 0.86
VPS53-211ENST00000571805 EMC9Q9Y3B6 208 aa20.42■□□□□ 0.86
VPS53-211ENST00000571805 ZNF354AO60765 605 aaPredicted RBP20.41■□□□□ 0.86
VPS53-211ENST00000571805 ZNF250P15622 560 aa20.41■□□□□ 0.86
VPS53-211ENST00000571805 ZP4Q12836 540 aa20.41■□□□□ 0.86
VPS53-211ENST00000571805 COX15Q7KZN9 410 aa20.41■□□□□ 0.86
VPS53-211ENST00000571805 OR2AK2Q8NG84 335 aa20.41■□□□□ 0.86
VPS53-211ENST00000571805 OR51A2Q8NGJ7 313 aa20.41■□□□□ 0.86
VPS53-211ENST00000571805 OR8S1Q8NH09 359 aa20.41■□□□□ 0.86
VPS53-211ENST00000571805 OR6S1Q8NH40 331 aa20.41■□□□□ 0.86
VPS53-211ENST00000571805 ASB10Q8WXI3 467 aa20.41■□□□□ 0.86
VPS53-211ENST00000571805 CHST6Q9GZX3 395 aa20.41■□□□□ 0.86
VPS53-211ENST00000571805 FGF21Q9NSA1 209 aa20.41■□□□□ 0.86
VPS53-211ENST00000571805 CGGBP1Q9UFW8 167 aaPredicted RBP20.41■□□□□ 0.86
VPS53-211ENST00000571805 A0A1W2PPL8 197 aa20.41■□□□□ 0.86
VPS53-211ENST00000571805 C2orf72A6NCS6 295 aa20.41■□□□□ 0.86
VPS53-211ENST00000571805 I3L521 148 aa20.41■□□□□ 0.86
VPS53-211ENST00000571805 AANATQ16613 207 aa20.41■□□□□ 0.86
VPS53-211ENST00000571805 PCK2Q16822 640 aa20.41■□□□□ 0.86
VPS53-211ENST00000571805 GABRG1Q8N1C3 465 aa20.41■□□□□ 0.86
VPS53-211ENST00000571805 ST7LQ8TDW4 575 aa20.41■□□□□ 0.86
VPS53-211ENST00000571805 ARL5BQ96KC2 179 aa20.41■□□□□ 0.86
VPS53-211ENST00000571805 APMAPQ9HDC9 416 aa20.41■□□□□ 0.86
VPS53-211ENST00000571805 UBE2MP61081 183 aaKnown RBP20.4■□□□□ 0.86
VPS53-211ENST00000571805 SEC61A1P61619 476 aaKnown RBP20.4■□□□□ 0.86
VPS53-211ENST00000571805 FMODQ06828 376 aa20.4■□□□□ 0.86
VPS53-211ENST00000571805 C3P1Q6ZMU1 363 aa20.4■□□□□ 0.86
VPS53-211ENST00000571805 MISPQ8IVT2 679 aa20.4■□□□□ 0.86
VPS53-211ENST00000571805 ZNF248Q8NDW4 579 aa20.4■□□□□ 0.86
VPS53-211ENST00000571805 TMEM234Q8WY98 164 aa20.4■□□□□ 0.86
VPS53-211ENST00000571805 MESP1Q9BRJ9 268 aa20.4■□□□□ 0.86
VPS53-211ENST00000571805 NARFLQ9H6Q4 476 aa20.4■□□□□ 0.86
VPS53-211ENST00000571805 HHLA2Q9UM44 414 aa20.4■□□□□ 0.86
VPS53-211ENST00000571805 TUBAL3A6NHL2 446 aa20.39■□□□□ 0.86
VPS53-211ENST00000571805 SULT1C2O00338 296 aa20.39■□□□□ 0.86
VPS53-211ENST00000571805 LDLRAD4O15165 306 aa20.39■□□□□ 0.86
VPS53-211ENST00000571805 DOK2O60496 412 aa20.39■□□□□ 0.86
VPS53-211ENST00000571805 ISG15P05161 165 aa20.39■□□□□ 0.86
VPS53-211ENST00000571805 GABRA1P14867 456 aa20.39■□□□□ 0.86
VPS53-211ENST00000571805 ARRB1P49407 418 aaPredicted RBP20.39■□□□□ 0.86
VPS53-211ENST00000571805 OC90Q02509 493 aaPredicted RBP20.39■□□□□ 0.86
VPS53-211ENST00000571805 TMEM205Q6UW68 189 aa20.39■□□□□ 0.86
VPS53-211ENST00000571805 PRSS42Q7Z5A4 293 aa20.39■□□□□ 0.86
VPS53-211ENST00000571805 OR6M1Q8NGM8 313 aa20.39■□□□□ 0.86
VPS53-211ENST00000571805 EXPH5Q8NEV8 1989 aa20.39■□□□□ 0.85
VPS53-211ENST00000571805 ADAMTS20P59510 1910 aa20.39■□□□□ 0.85
VPS53-211ENST00000571805 CEP192Q8TEP8 1941 aa20.39■□□□□ 0.85
VPS53-211ENST00000571805 ANKUB1A6NFN9 424 aa20.39■□□□□ 0.85
VPS53-211ENST00000571805 A6NIZ1 184 aa20.39■□□□□ 0.85
VPS53-211ENST00000571805 ZSCAN5BA6NJL1 495 aa20.39■□□□□ 0.85
VPS53-211ENST00000571805 HMSDA8MTL9 139 aa20.39■□□□□ 0.85
VPS53-211ENST00000571805 ITGB2P05107 769 aa20.39■□□□□ 0.85
VPS53-211ENST00000571805 MELTFP08582 738 aa20.39■□□□□ 0.85
VPS53-211ENST00000571805 GLB1P16278 677 aa20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms