RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 PGA3P0DJD8 388 aa14.89□□□□□ -0.03
CLK3-227ENST00000570296 IGLL1P15814 213 aa14.89□□□□□ -0.03
CLK3-227ENST00000570296 GSTM3P21266 225 aa14.89□□□□□ -0.03
CLK3-227ENST00000570296 KITLGP21583 273 aa14.89□□□□□ -0.03
CLK3-227ENST00000570296 SLC6A2P23975 617 aa14.89□□□□□ -0.03
CLK3-227ENST00000570296 CRATP43155 626 aa14.89□□□□□ -0.03
CLK3-227ENST00000570296 CCT5P48643 541 aa14.89□□□□□ -0.03
CLK3-227ENST00000570296 ALG10BQ5I7T1 473 aa14.89□□□□□ -0.03
CLK3-227ENST00000570296 C1orf122Q6ZSJ8 110 aa14.89□□□□□ -0.03
CLK3-227ENST00000570296 LYG1Q8N1E2 194 aa14.89□□□□□ -0.03
CLK3-227ENST00000570296 PIP4P2Q8N4L2 257 aa14.89□□□□□ -0.03
CLK3-227ENST00000570296 PNLDC1Q8NA58 520 aaKnown RBP14.89□□□□□ -0.03
CLK3-227ENST00000570296 ZNF607Q96SK3 696 aa14.89□□□□□ -0.03
CLK3-227ENST00000570296 FMO2Q99518 471 aa14.89□□□□□ -0.03
CLK3-227ENST00000570296 PPA2Q9H2U2 334 aa14.89□□□□□ -0.03
CLK3-227ENST00000570296 PSMC3IPQ9P2W1 217 aaPredicted RBP14.89□□□□□ -0.03
CLK3-227ENST00000570296 BTNL2Q9UIR0 455 aa14.89□□□□□ -0.03
CLK3-227ENST00000570296 CCDC154A6NI56 674 aa14.88□□□□□ -0.03
CLK3-227ENST00000570296 LRRC30A6NM36 301 aa14.88□□□□□ -0.03
CLK3-227ENST00000570296 C11orf98E9PRG8 122 aa14.88□□□□□ -0.03
CLK3-227ENST00000570296 NHLRC4P0CG21 123 aaPredicted RBP14.88□□□□□ -0.03
CLK3-227ENST00000570296 ADORA3P0DMS8 318 aa14.88□□□□□ -0.03
CLK3-227ENST00000570296 CD33P20138 364 aa14.88□□□□□ -0.03
CLK3-227ENST00000570296 TUBG1P23258 451 aa14.88□□□□□ -0.03
CLK3-227ENST00000570296 TAF11Q15544 211 aa14.88□□□□□ -0.03
CLK3-227ENST00000570296 ZNF181Q2M3W8 571 aa14.88□□□□□ -0.03
CLK3-227ENST00000570296 DPY19L1Q2PZI1 675 aa14.88□□□□□ -0.03
CLK3-227ENST00000570296 FAM91A1Q658Y4 838 aa14.88□□□□□ -0.03
CLK3-227ENST00000570296 NDUFA11Q86Y39 141 aa14.88□□□□□ -0.03
CLK3-227ENST00000570296 C1orf87Q8N0U7 546 aa14.88□□□□□ -0.03
CLK3-227ENST00000570296 NPEPL1Q8NDH3 523 aa14.88□□□□□ -0.03
CLK3-227ENST00000570296 OR5J2Q8NH18 312 aa14.88□□□□□ -0.03
CLK3-227ENST00000570296 ZNF420Q8TAQ5 688 aaPredicted RBP14.88□□□□□ -0.03
CLK3-227ENST00000570296 AGR3Q8TD06 166 aa14.88□□□□□ -0.03
CLK3-227ENST00000570296 NPRL2Q8WTW4 380 aa14.88□□□□□ -0.03
CLK3-227ENST00000570296 C16orf45Q96MC5 204 aaPredicted RBP14.88□□□□□ -0.03
CLK3-227ENST00000570296 SIAEQ9HAT2 523 aa14.88□□□□□ -0.03
CLK3-227ENST00000570296 TUBG2Q9NRH3 451 aa14.88□□□□□ -0.03
CLK3-227ENST00000570296 PCDHGB5Q9Y5G0 923 aa14.88□□□□□ -0.03
CLK3-227ENST00000570296 E9PQ18 207 aa14.87□□□□□ -0.03
CLK3-227ENST00000570296 FBXO24O75426 580 aa14.87□□□□□ -0.03
CLK3-227ENST00000570296 ZNF32P17041 273 aa14.87□□□□□ -0.03
CLK3-227ENST00000570296 PSMB10P40306 273 aa14.87□□□□□ -0.03
CLK3-227ENST00000570296 DCTN2Q13561 401 aaKnown RBP14.87□□□□□ -0.03
CLK3-227ENST00000570296 PCLAFQ15004 111 aa14.87□□□□□ -0.03
CLK3-227ENST00000570296 HIST3H3Q16695 136 aa14.87□□□□□ -0.03
CLK3-227ENST00000570296 C8orf74Q6P047 294 aa14.87□□□□□ -0.03
CLK3-227ENST00000570296 ULK3Q6PHR2 472 aa14.87□□□□□ -0.03
CLK3-227ENST00000570296 ARL9Q6T311 187 aa14.87□□□□□ -0.03
CLK3-227ENST00000570296 LYPD2Q6UXB3 125 aa14.87□□□□□ -0.03
CLK3-227ENST00000570296 C10orf53Q8N6V4 93 aa14.87□□□□□ -0.03
CLK3-227ENST00000570296 OR4C13Q8NGP0 309 aa14.87□□□□□ -0.03
CLK3-227ENST00000570296 OR2T6Q8NHC8 308 aa14.87□□□□□ -0.03
CLK3-227ENST00000570296 AKR7LQ8NHP1 331 aa14.87□□□□□ -0.03
CLK3-227ENST00000570296 MCHR2Q969V1 340 aa14.87□□□□□ -0.03
CLK3-227ENST00000570296 C4orf45Q96LM5 186 aa14.87□□□□□ -0.03
CLK3-227ENST00000570296 TECTBQ96PL2 329 aa14.87□□□□□ -0.03
CLK3-227ENST00000570296 MKS1Q9NXB0 559 aa14.87□□□□□ -0.03
CLK3-227ENST00000570296 A0A0G2JPF8 293 aa14.86□□□□□ -0.03
CLK3-227ENST00000570296 A0A1W2PPM1 405 aa14.86□□□□□ -0.03
CLK3-227ENST00000570296 HNRNPCL2B2RXH8 293 aa14.86□□□□□ -0.03
CLK3-227ENST00000570296 HNRNPCL3B7ZW38 293 aa14.86□□□□□ -0.03
CLK3-227ENST00000570296 HNRNPCL1O60812 293 aaKnown RBP14.86□□□□□ -0.03
CLK3-227ENST00000570296 OR6A2O95222 327 aa14.86□□□□□ -0.03
CLK3-227ENST00000570296 MT-ATP6P00846 226 aa14.86□□□□□ -0.03
CLK3-227ENST00000570296 IGHG1P01857 330 aa14.86□□□□□ -0.03
CLK3-227ENST00000570296 BCHEP06276 602 aa14.86□□□□□ -0.03
CLK3-227ENST00000570296 HNRNPCL4P0DMR1 293 aa14.86□□□□□ -0.03
CLK3-227ENST00000570296 HTR2AP28223 471 aa14.86□□□□□ -0.03
CLK3-227ENST00000570296 MRPS34P82930 218 aaKnown RBP14.86□□□□□ -0.03
CLK3-227ENST00000570296 PSG4Q00888 419 aa14.86□□□□□ -0.03
CLK3-227ENST00000570296 SPANXN4Q5MJ08 99 aa14.86□□□□□ -0.03
CLK3-227ENST00000570296 SLC38A5Q8WUX1 472 aa14.86□□□□□ -0.03
CLK3-227ENST00000570296 MEGF10Q96KG7 1140 aa14.86□□□□□ -0.03
CLK3-227ENST00000570296 PANX1Q96RD7 426 aa14.86□□□□□ -0.03
CLK3-227ENST00000570296 LRRN3E7EW58 273 aa14.85□□□□□ -0.03
CLK3-227ENST00000570296 KRT75O95678 551 aa14.85□□□□□ -0.03
CLK3-227ENST00000570296 ETV4P43268 484 aa14.85□□□□□ -0.03
CLK3-227ENST00000570296 CLNS1AP54105 237 aaKnown RBP14.85□□□□□ -0.03
CLK3-227ENST00000570296 CLRN1P58418 232 aa14.85□□□□□ -0.03
CLK3-227ENST00000570296 KRTAP10-11P60412 298 aa14.85□□□□□ -0.03
CLK3-227ENST00000570296 MELKQ14680 651 aa14.85□□□□□ -0.03
CLK3-227ENST00000570296 RUNDC3AQ59EK9 446 aa14.85□□□□□ -0.03
CLK3-227ENST00000570296 RPS26P11Q5JNZ5 115 aaPredicted RBP14.85□□□□□ -0.03
CLK3-227ENST00000570296 CASC10Q5T4H9 136 aa14.85□□□□□ -0.03
CLK3-227ENST00000570296 ALDH16A1Q8IZ83 802 aa14.85□□□□□ -0.03
CLK3-227ENST00000570296 PAPD5Q8NDF8 572 aaKnown RBP14.85□□□□□ -0.03
CLK3-227ENST00000570296 PPP1R35Q8TAP8 253 aa14.85□□□□□ -0.03
CLK3-227ENST00000570296 RANBP3Q9H6Z4 567 aaPredicted RBP14.85□□□□□ -0.03
CLK3-227ENST00000570296 SELENONQ9NZV5 590 aa14.85□□□□□ -0.03
CLK3-227ENST00000570296 LCE6AA0A183 80 aa14.84□□□□□ -0.03
CLK3-227ENST00000570296 VSIG10L2P0DP72 767 aa14.84□□□□□ -0.03
CLK3-227ENST00000570296 S100A3P33764 101 aa14.84□□□□□ -0.03
CLK3-227ENST00000570296 MSX2P35548 267 aaPredicted RBP14.84□□□□□ -0.03
CLK3-227ENST00000570296 SRP9P49458 86 aaKnown RBP14.84□□□□□ -0.03
CLK3-227ENST00000570296 FAM201AQ5SY85 155 aa14.84□□□□□ -0.03
CLK3-227ENST00000570296 C10orf128Q5T292 105 aa14.84□□□□□ -0.03
CLK3-227ENST00000570296 ZNF621Q6ZSS3 439 aa14.84□□□□□ -0.03
CLK3-227ENST00000570296 CALHM3Q86XJ0 350 aa14.84□□□□□ -0.03
CLK3-227ENST00000570296 PDZD9Q8IXQ8 264 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms