RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 SMIM10Q96HG1 83 aa13.09□□□□□ -0.31
VPS35-210ENST00000568784 SFXN1Q9H9B4 322 aa13.09□□□□□ -0.31
VPS35-210ENST00000568784 MBD2Q9UBB5 411 aa13.09□□□□□ -0.31
VPS35-210ENST00000568784 GLS2Q9UI32 602 aa13.09□□□□□ -0.31
VPS35-210ENST00000568784 COA3Q9Y2R0 106 aaPredicted RBP13.09□□□□□ -0.31
VPS35-210ENST00000568784 TMEM150CB9EJG8 249 aa13.09□□□□□ -0.31
VPS35-210ENST00000568784 WNT11O96014 354 aa13.09□□□□□ -0.31
VPS35-210ENST00000568784 KIR3DL2P43630 455 aa13.09□□□□□ -0.31
VPS35-210ENST00000568784 C7orf61Q8IZ16 206 aa13.09□□□□□ -0.31
VPS35-210ENST00000568784 FAM160A2Q8N612 972 aaPredicted RBP13.09□□□□□ -0.31
VPS35-210ENST00000568784 OR10R2Q8NGX6 335 aa13.09□□□□□ -0.31
VPS35-210ENST00000568784 MARC2Q969Z3 335 aa13.09□□□□□ -0.31
VPS35-210ENST00000568784 NUDT22Q9BRQ3 303 aa13.09□□□□□ -0.31
VPS35-210ENST00000568784 LMF2Q9BU23 707 aaKnown RBP13.09□□□□□ -0.31
VPS35-210ENST00000568784 SELENOIQ9C0D9 397 aa13.09□□□□□ -0.31
VPS35-210ENST00000568784 SHARPINQ9H0F6 387 aa13.09□□□□□ -0.31
VPS35-210ENST00000568784 HRH4Q9H3N8 390 aa13.09□□□□□ -0.31
VPS35-210ENST00000568784 POLE3Q9NRF9 147 aa13.09□□□□□ -0.31
VPS35-210ENST00000568784 DHCR7Q9UBM7 475 aaKnown RBP13.09□□□□□ -0.31
VPS35-210ENST00000568784 TRIM77I1YAP6 450 aa13.09□□□□□ -0.31
VPS35-210ENST00000568784 PMS2P2O95744 297 aa13.09□□□□□ -0.31
VPS35-210ENST00000568784 UBBP0CG47 229 aa13.09□□□□□ -0.31
VPS35-210ENST00000568784 UBCP0CG48 685 aaKnown RBP13.09□□□□□ -0.31
VPS35-210ENST00000568784 MNX1P50219 401 aaPredicted RBP13.09□□□□□ -0.31
VPS35-210ENST00000568784 RPS27AP62979 156 aaKnown RBP13.09□□□□□ -0.31
VPS35-210ENST00000568784 UBA52P62987 128 aaKnown RBP13.09□□□□□ -0.31
VPS35-210ENST00000568784 SLC22A6Q4U2R8 563 aa13.09□□□□□ -0.31
VPS35-210ENST00000568784 TMEM151BQ8IW70 566 aa13.09□□□□□ -0.31
VPS35-210ENST00000568784 OR1S2Q8NGQ3 325 aa13.09□□□□□ -0.31
VPS35-210ENST00000568784 NPRL2Q8WTW4 380 aa13.09□□□□□ -0.31
VPS35-210ENST00000568784 TMED6Q8WW62 240 aa13.09□□□□□ -0.31
VPS35-210ENST00000568784 RLN3Q8WXF3 142 aa13.09□□□□□ -0.31
VPS35-210ENST00000568784 TSLPQ969D9 159 aa13.09□□□□□ -0.31
VPS35-210ENST00000568784 GDE1Q9NZC3 331 aa13.09□□□□□ -0.31
VPS35-210ENST00000568784 PRODH2Q9UF12 536 aa13.09□□□□□ -0.31
VPS35-210ENST00000568784 CYP8B1Q9UNU6 501 aa13.09□□□□□ -0.31
VPS35-210ENST00000568784 RNF215Q9Y6U7 377 aa13.09□□□□□ -0.31
VPS35-210ENST00000568784 RFPL4AA6NLU0 287 aa13.08□□□□□ -0.32
VPS35-210ENST00000568784 RFPL4AL1F8VTS6 287 aa13.08□□□□□ -0.32
VPS35-210ENST00000568784 HTR3BO95264 441 aa13.08□□□□□ -0.32
VPS35-210ENST00000568784 PNPP00491 289 aa13.08□□□□□ -0.32
VPS35-210ENST00000568784 ARFRP1Q13795 201 aa13.08□□□□□ -0.32
VPS35-210ENST00000568784 C1orf189Q5VU69 101 aa13.08□□□□□ -0.32
VPS35-210ENST00000568784 OR2W3Q7Z3T1 314 aa13.08□□□□□ -0.32
VPS35-210ENST00000568784 OR13C9Q8NGT0 318 aa13.08□□□□□ -0.32
VPS35-210ENST00000568784 MRPS24Q96EL2 167 aaKnown RBP13.08□□□□□ -0.32
VPS35-210ENST00000568784 PBX4Q9BYU1 374 aa13.08□□□□□ -0.32
VPS35-210ENST00000568784 METTL8Q9H825 291 aaKnown RBP13.08□□□□□ -0.32
VPS35-210ENST00000568784 PCDHB10Q9UN67 800 aa13.08□□□□□ -0.32
VPS35-210ENST00000568784 IGKV1D-42A0A075B6H8 117 aa13.08□□□□□ -0.32
VPS35-210ENST00000568784 TMEM269A0A1B0GVZ9 245 aa13.08□□□□□ -0.32
VPS35-210ENST00000568784 HMSDA8MTL9 139 aa13.08□□□□□ -0.32
VPS35-210ENST00000568784 PMP2P02689 132 aa13.08□□□□□ -0.32
VPS35-210ENST00000568784 SLC2A1P11166 492 aa13.08□□□□□ -0.32
VPS35-210ENST00000568784 MFGE8Q08431 387 aaPredicted RBP13.08□□□□□ -0.32
VPS35-210ENST00000568784 GGTLC2Q14390 218 aa13.08□□□□□ -0.32
VPS35-210ENST00000568784 MOGAT2Q3SYC2 334 aa13.08□□□□□ -0.32
VPS35-210ENST00000568784 TMEM240Q5SV17 173 aa13.08□□□□□ -0.32
VPS35-210ENST00000568784 PAPD4Q6PIY7 484 aaKnown RBP13.08□□□□□ -0.32
VPS35-210ENST00000568784 CBLN2Q8IUK8 224 aa13.08□□□□□ -0.32
VPS35-210ENST00000568784 ESX1Q8N693 406 aa13.08□□□□□ -0.32
VPS35-210ENST00000568784 LDAHQ9H6V9 325 aa13.08□□□□□ -0.32
VPS35-210ENST00000568784 VDAC3Q9Y277 283 aa13.08□□□□□ -0.32
VPS35-210ENST00000568784 AUP1Q9Y679 476 aa13.08□□□□□ -0.32
VPS35-210ENST00000568784 TUBAL3A6NHL2 446 aa13.08□□□□□ -0.32
VPS35-210ENST00000568784 H3BML4 177 aa13.08□□□□□ -0.32
VPS35-210ENST00000568784 SLC17A2O00624 439 aa13.08□□□□□ -0.32
VPS35-210ENST00000568784 ZNF749O43361 778 aa13.08□□□□□ -0.32
VPS35-210ENST00000568784 ICOSLGO75144 302 aa13.08□□□□□ -0.32
VPS35-210ENST00000568784 SNTB1Q13884 538 aaKnown RBP13.08□□□□□ -0.32
VPS35-210ENST00000568784 SPAG16Q8N0X2 631 aa13.08□□□□□ -0.32
VPS35-210ENST00000568784 NAXEQ8NCW5 288 aa13.08□□□□□ -0.32
VPS35-210ENST00000568784 OR52H1Q8NGJ2 320 aa13.08□□□□□ -0.32
VPS35-210ENST00000568784 CMTM3Q96MX0 182 aa13.08□□□□□ -0.32
VPS35-210ENST00000568784 ZNF578Q96N58 590 aaPredicted RBP13.08□□□□□ -0.32
VPS35-210ENST00000568784 AHSA1O95433 338 aa13.07□□□□□ -0.32
VPS35-210ENST00000568784 H2BFMP0C1H6 154 aa13.07□□□□□ -0.32
VPS35-210ENST00000568784 FOXL2P58012 376 aa13.07□□□□□ -0.32
VPS35-210ENST00000568784 FGL1Q08830 312 aa13.07□□□□□ -0.32
VPS35-210ENST00000568784 PMPCAQ10713 525 aa13.07□□□□□ -0.32
VPS35-210ENST00000568784 SLC17A1Q14916 467 aa13.07□□□□□ -0.32
VPS35-210ENST00000568784 PDSS1Q5T2R2 415 aa13.07□□□□□ -0.32
VPS35-210ENST00000568784 TMEM225Q6GV28 225 aa13.07□□□□□ -0.32
VPS35-210ENST00000568784 SLC36A1Q7Z2H8 476 aa13.07□□□□□ -0.32
VPS35-210ENST00000568784 C19orf47Q8N9M1 422 aaKnown RBP13.07□□□□□ -0.32
VPS35-210ENST00000568784 FGGYQ96C11 551 aa13.07□□□□□ -0.32
VPS35-210ENST00000568784 ZNF426Q9BUY5 554 aa13.07□□□□□ -0.32
VPS35-210ENST00000568784 ZNF208O43345 1280 aa13.07□□□□□ -0.32
VPS35-210ENST00000568784 LMX1BO60663 402 aa13.07□□□□□ -0.32
VPS35-210ENST00000568784 ZNF254O75437 659 aa13.07□□□□□ -0.32
VPS35-210ENST00000568784 THEGLP0DJG4 465 aa13.07□□□□□ -0.32
VPS35-210ENST00000568784 FMODQ06828 376 aa13.07□□□□□ -0.32
VPS35-210ENST00000568784 PLCXD2Q0VAA5 305 aa13.07□□□□□ -0.32
VPS35-210ENST00000568784 ATPAF1Q5TC12 328 aaPredicted RBP13.07□□□□□ -0.32
VPS35-210ENST00000568784 MAMDC2Q7Z304 686 aaPredicted RBP13.07□□□□□ -0.32
VPS35-210ENST00000568784 PARP12Q9H0J9 701 aaKnown RBP13.07□□□□□ -0.32
VPS35-210ENST00000568784 ZCCHC4Q9H5U6 513 aa13.07□□□□□ -0.32
VPS35-210ENST00000568784 HHLA2Q9UM44 414 aa13.07□□□□□ -0.32
VPS35-210ENST00000568784 SDK2Q58EX2 2172 aa13.07□□□□□ -0.32
VPS35-210ENST00000568784 SFTPBP07988 381 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms