RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 LHFPL6Q9Y693 200 aa26.94■■□□□ 1.9
CTCF-203ENST00000566078 CD36P16671 472 aa26.93■■□□□ 1.9
CTCF-203ENST00000566078 MRPS34P82930 218 aaKnown RBP26.93■■□□□ 1.9
CTCF-203ENST00000566078 EGR3Q06889 387 aa26.93■■□□□ 1.9
CTCF-203ENST00000566078 PLEKHG7Q6ZR37 379 aa26.93■■□□□ 1.9
CTCF-203ENST00000566078 SEM1Q6ZVN7 128 aa26.93■■□□□ 1.9
CTCF-203ENST00000566078 ZFP41Q8N8Y5 198 aa26.93■■□□□ 1.9
CTCF-203ENST00000566078 CNEP1R1Q8N9A8 125 aa26.93■■□□□ 1.9
CTCF-203ENST00000566078 ABHD6Q9BV23 337 aa26.93■■□□□ 1.9
CTCF-203ENST00000566078 FUNDC2Q9BWH2 189 aa26.93■■□□□ 1.9
CTCF-203ENST00000566078 TRIM36Q9NQ86 728 aa26.93■■□□□ 1.9
CTCF-203ENST00000566078 ACOXLQ9NUZ1 547 aa26.93■■□□□ 1.9
CTCF-203ENST00000566078 TMEM38BQ9NVV0 291 aa26.93■■□□□ 1.9
CTCF-203ENST00000566078 PRSS50Q9UI38 385 aa26.93■■□□□ 1.9
CTCF-203ENST00000566078 SHANK1Q9Y566 2161 aa26.92■■□□□ 1.9
CTCF-203ENST00000566078 PRRG2O14669 202 aa26.92■■□□□ 1.9
CTCF-203ENST00000566078 OR8G3PP0DMU2 310 aa26.92■■□□□ 1.9
CTCF-203ENST00000566078 OR3A2P47893 321 aa26.92■■□□□ 1.9
CTCF-203ENST00000566078 RGS6P49758 472 aa26.92■■□□□ 1.9
CTCF-203ENST00000566078 ACSM1Q08AH1 577 aa26.92■■□□□ 1.9
CTCF-203ENST00000566078 ZNF684Q5T5D7 378 aa26.92■■□□□ 1.9
CTCF-203ENST00000566078 PCSK4Q6UW60 755 aa26.92■■□□□ 1.9
CTCF-203ENST00000566078 FAM220AQ7Z4H9 259 aa26.92■■□□□ 1.9
CTCF-203ENST00000566078 OR52N5Q8NH56 324 aa26.92■■□□□ 1.9
CTCF-203ENST00000566078 FOXB1Q99853 325 aa26.92■■□□□ 1.9
CTCF-203ENST00000566078 ZNF416Q9BWM5 594 aa26.92■■□□□ 1.9
CTCF-203ENST00000566078 NAA50Q9GZZ1 169 aaKnown RBP26.92■■□□□ 1.9
CTCF-203ENST00000566078 MRM2Q9UI43 246 aaKnown RBP26.92■■□□□ 1.9
CTCF-203ENST00000566078 PNMA8CA0A1B0GUJ8 204 aa26.91■■□□□ 1.9
CTCF-203ENST00000566078 CCRL2O00421 344 aa26.91■■□□□ 1.9
CTCF-203ENST00000566078 KRT8P05787 483 aa26.91■■□□□ 1.9
CTCF-203ENST00000566078 EDN3P14138 238 aa26.91■■□□□ 1.9
CTCF-203ENST00000566078 NPR2P20594 1047 aa26.91■■□□□ 1.9
CTCF-203ENST00000566078 CAPZA2P47755 286 aa26.91■■□□□ 1.9
CTCF-203ENST00000566078 PER3P56645 1201 aa26.91■■□□□ 1.9
CTCF-203ENST00000566078 LSM6P62312 80 aaKnown RBP26.91■■□□□ 1.9
CTCF-203ENST00000566078 SSX1Q16384 188 aa26.91■■□□□ 1.9
CTCF-203ENST00000566078 LIPKQ5VXJ0 399 aa26.91■■□□□ 1.9
CTCF-203ENST00000566078 C3P1Q6ZMU1 363 aa26.91■■□□□ 1.9
CTCF-203ENST00000566078 SPATC1Q76KD6 591 aa26.91■■□□□ 1.9
CTCF-203ENST00000566078 ST7LQ8TDW4 575 aa26.91■■□□□ 1.9
CTCF-203ENST00000566078 UFD1Q92890 307 aa26.91■■□□□ 1.9
CTCF-203ENST00000566078 PELI1Q96FA3 418 aa26.91■■□□□ 1.9
CTCF-203ENST00000566078 ASH2LQ9UBL3 628 aa26.91■■□□□ 1.9
CTCF-203ENST00000566078 SPTA1P02549 2419 aa26.91■■□□□ 1.9
CTCF-203ENST00000566078 METTL15A6NJ78 407 aa26.9■■□□□ 1.9
CTCF-203ENST00000566078 RPL36A-HNRNPH2H7BZ11 118 aa26.9■■□□□ 1.9
CTCF-203ENST00000566078 WNT11O96014 354 aa26.9■■□□□ 1.9
CTCF-203ENST00000566078 HOXD4P09016 255 aaPredicted RBP26.9■■□□□ 1.9
CTCF-203ENST00000566078 B4GALT1P15291 398 aa26.9■■□□□ 1.9
CTCF-203ENST00000566078 BDH1Q02338 343 aa26.9■■□□□ 1.9
CTCF-203ENST00000566078 FAPQ12884 760 aa26.9■■□□□ 1.9
CTCF-203ENST00000566078 RPRMLQ8N4K4 120 aa26.9■■□□□ 1.9
CTCF-203ENST00000566078 YIPF7Q8N8F6 280 aa26.9■■□□□ 1.9
CTCF-203ENST00000566078 OR2AJ1Q8NGZ0 328 aa26.9■■□□□ 1.9
CTCF-203ENST00000566078 OR8B4Q96RC9 309 aa26.9■■□□□ 1.9
CTCF-203ENST00000566078 TP63Q9H3D4 680 aaPredicted RBP26.9■■□□□ 1.9
CTCF-203ENST00000566078 SLCO1C1Q9NYB5 712 aa26.9■■□□□ 1.9
CTCF-203ENST00000566078 E9PI62 339 aa26.9■■□□□ 1.9
CTCF-203ENST00000566078 SLC19A2O60779 497 aa26.9■■□□□ 1.9
CTCF-203ENST00000566078 CPEP16870 476 aa26.9■■□□□ 1.9
CTCF-203ENST00000566078 GTF2A1P52655 376 aaPredicted RBP26.9■■□□□ 1.9
CTCF-203ENST00000566078 STK11Q15831 433 aa26.9■■□□□ 1.9
CTCF-203ENST00000566078 KCTD18Q6PI47 426 aaPredicted RBP26.9■■□□□ 1.9
CTCF-203ENST00000566078 LRRN1Q6UXK5 716 aa26.9■■□□□ 1.9
CTCF-203ENST00000566078 LRRC18Q8N456 261 aa26.9■■□□□ 1.9
CTCF-203ENST00000566078 GDF2Q9UK05 429 aaPredicted RBP26.9■■□□□ 1.9
CTCF-203ENST00000566078 ZNF835Q9Y2P0 537 aa26.9■■□□□ 1.9
CTCF-203ENST00000566078 GRIP1Q9Y3R0 1128 aa26.9■■□□□ 1.9
CTCF-203ENST00000566078 SULT1C4O75897 302 aa26.89■■□□□ 1.9
CTCF-203ENST00000566078 KIR2DL2P43627 348 aaPredicted RBP26.89■■□□□ 1.9
CTCF-203ENST00000566078 GBX2P52951 348 aaPredicted RBP26.89■■□□□ 1.9
CTCF-203ENST00000566078 RBPJQ06330 500 aa26.89■■□□□ 1.9
CTCF-203ENST00000566078 FOXF2Q12947 444 aa26.89■■□□□ 1.9
CTCF-203ENST00000566078 ENDOGQ14249 297 aaKnown RBP26.89■■□□□ 1.9
CTCF-203ENST00000566078 C9orf135Q5VTT2 229 aa26.89■■□□□ 1.9
CTCF-203ENST00000566078 KCTD20Q7Z5Y7 419 aa26.89■■□□□ 1.9
CTCF-203ENST00000566078 KRT77Q7Z794 578 aa26.89■■□□□ 1.9
CTCF-203ENST00000566078 P2RY8Q86VZ1 359 aa26.89■■□□□ 1.9
CTCF-203ENST00000566078 OR6K3Q8NGY3 331 aa26.89■■□□□ 1.9
CTCF-203ENST00000566078 C1orf198Q9H425 327 aa26.89■■□□□ 1.9
CTCF-203ENST00000566078 SIAEQ9HAT2 523 aa26.89■■□□□ 1.9
CTCF-203ENST00000566078 MALT1Q9UDY8 824 aa26.89■■□□□ 1.9
CTCF-203ENST00000566078 USP24Q9UPU5 2620 aa26.88■■□□□ 1.89
CTCF-203ENST00000566078 ABHD16AO95870 558 aa26.88■■□□□ 1.89
CTCF-203ENST00000566078 TACSTD2P09758 323 aa26.88■■□□□ 1.89
CTCF-203ENST00000566078 TPBGQ13641 420 aa26.88■■□□□ 1.89
CTCF-203ENST00000566078 FBXW9Q5XUX1 488 aa26.88■■□□□ 1.89
CTCF-203ENST00000566078 VWA1Q6PCB0 445 aa26.88■■□□□ 1.89
CTCF-203ENST00000566078 TFAP2EQ6VUC0 442 aa26.88■■□□□ 1.89
CTCF-203ENST00000566078 CFAP77Q6ZQR2 320 aa26.88■■□□□ 1.89
CTCF-203ENST00000566078 ABHD12BQ7Z5M8 362 aaPredicted RBP26.88■■□□□ 1.89
CTCF-203ENST00000566078 DOLPP1Q86YN1 238 aa26.88■■□□□ 1.89
CTCF-203ENST00000566078 PHC2Q8IXK0 858 aa26.88■■□□□ 1.89
CTCF-203ENST00000566078 ISOC1Q96CN7 298 aa26.88■■□□□ 1.89
CTCF-203ENST00000566078 MAP6Q96JE9 813 aa26.88■■□□□ 1.89
CTCF-203ENST00000566078 MROQ9BYG7 248 aa26.88■■□□□ 1.89
CTCF-203ENST00000566078 NDUFB11Q9NX14 153 aa26.88■■□□□ 1.89
CTCF-203ENST00000566078 ENPP5Q9UJA9 477 aa26.88■■□□□ 1.89
CTCF-203ENST00000566078 NOL3O60936 208 aaKnown RBP26.87■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms