RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 ELL3Q9HB65 397 aaPredicted RBP10.26□□□□□ -0.77
LDLR-208ENST00000558518 SLC22A7Q9Y694 548 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 BRWD1Q9NSI6 2320 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 MAP1BP46821 2468 aaKnown RBP10.26□□□□□ -0.77
LDLR-208ENST00000558518 OIP5O43482 229 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 RPA2P15927 270 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 ACTBP60709 375 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 ACTG1P63261 375 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 PSG6Q00889 435 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 JMJD6Q6NYC1 403 aaPredicted RBP10.26□□□□□ -0.77
LDLR-208ENST00000558518 DPY19L2P2Q6ZN68 376 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 SAMD14Q8IZD0 417 aaPredicted RBP10.26□□□□□ -0.77
LDLR-208ENST00000558518 BHLHE23Q8NDY6 225 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 OR1J4Q8NGS1 313 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 ZC3H10Q96K80 434 aaKnown RBP10.26□□□□□ -0.77
LDLR-208ENST00000558518 ADOQ96SZ5 270 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 JAM3Q9BX67 310 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 PLEKHA1Q9HB21 404 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 DUSP22Q9NRW4 184 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 SDK2Q58EX2 2172 aa10.25□□□□□ -0.77
LDLR-208ENST00000558518 C2orf72A6NCS6 295 aa10.25□□□□□ -0.77
LDLR-208ENST00000558518 PMS2P2O95744 297 aa10.25□□□□□ -0.77
LDLR-208ENST00000558518 KNG1P01042 644 aa10.25□□□□□ -0.77
LDLR-208ENST00000558518 GNB3P16520 340 aa10.25□□□□□ -0.77
LDLR-208ENST00000558518 ZNF14P17017 642 aaPredicted RBP10.25□□□□□ -0.77
LDLR-208ENST00000558518 HTR2CP28335 458 aa10.25□□□□□ -0.77
LDLR-208ENST00000558518 HRH1P35367 487 aa10.25□□□□□ -0.77
LDLR-208ENST00000558518 ADPRHP54922 357 aa10.25□□□□□ -0.77
LDLR-208ENST00000558518 RPL18Q07020 188 aaKnown RBP10.25□□□□□ -0.77
LDLR-208ENST00000558518 ELAVL1Q15717 326 aaKnown RBP10.25□□□□□ -0.77
LDLR-208ENST00000558518 FAM78AQ5JUQ0 283 aa10.25□□□□□ -0.77
LDLR-208ENST00000558518 FAM209BQ5JX69 171 aa10.25□□□□□ -0.77
LDLR-208ENST00000558518 ANKRD16Q6P6B7 361 aa10.25□□□□□ -0.77
LDLR-208ENST00000558518 SLC29A4Q7RTT9 530 aa10.25□□□□□ -0.77
LDLR-208ENST00000558518 MCATQ8IVS2 390 aaKnown RBP10.25□□□□□ -0.77
LDLR-208ENST00000558518 MARCH1Q8TCQ1 289 aa10.25□□□□□ -0.77
LDLR-208ENST00000558518 ARL11Q969Q4 196 aa10.25□□□□□ -0.77
LDLR-208ENST00000558518 APOOQ9BUR5 198 aa10.25□□□□□ -0.77
LDLR-208ENST00000558518 TMPRSS13Q9BYE2 586 aa10.25□□□□□ -0.77
LDLR-208ENST00000558518 CHMP1AQ9HD42 196 aaPredicted RBP10.25□□□□□ -0.77
LDLR-208ENST00000558518 FRMPD3Q5JV73 1810 aa10.25□□□□□ -0.77
LDLR-208ENST00000558518 A0A087WV62 115 aa10.25□□□□□ -0.77
LDLR-208ENST00000558518 BCL2L11O43521 198 aa10.25□□□□□ -0.77
LDLR-208ENST00000558518 FAM76BQ5HYJ3 339 aa10.25□□□□□ -0.77
LDLR-208ENST00000558518 AVPI1Q5T686 147 aa10.25□□□□□ -0.77
LDLR-208ENST00000558518 PRSS35Q8N3Z0 413 aa10.25□□□□□ -0.77
LDLR-208ENST00000558518 OR1E3Q8WZA6 343 aa10.25□□□□□ -0.77
LDLR-208ENST00000558518 TMEM41AQ96HV5 264 aa10.25□□□□□ -0.77
LDLR-208ENST00000558518 OR2M4Q96R27 311 aa10.25□□□□□ -0.77
LDLR-208ENST00000558518 SPSB2Q99619 263 aa10.25□□□□□ -0.77
LDLR-208ENST00000558518 ZFYVE21Q9BQ24 234 aa10.25□□□□□ -0.77
LDLR-208ENST00000558518 HAO2Q9NYQ3 351 aa10.25□□□□□ -0.77
LDLR-208ENST00000558518 FANCMQ8IYD8 2048 aa10.25□□□□□ -0.77
LDLR-208ENST00000558518 MED6O75586 246 aa10.25□□□□□ -0.77
LDLR-208ENST00000558518 AQP8O94778 261 aa10.25□□□□□ -0.77
LDLR-208ENST00000558518 PNPP00491 289 aa10.25□□□□□ -0.77
LDLR-208ENST00000558518 RAB6AP20340 208 aa10.25□□□□□ -0.77
LDLR-208ENST00000558518 PEA15Q15121 130 aa10.25□□□□□ -0.77
LDLR-208ENST00000558518 TMEM52BQ4KMG9 183 aa10.25□□□□□ -0.77
LDLR-208ENST00000558518 AGBL4Q5VU57 503 aa10.25□□□□□ -0.77
LDLR-208ENST00000558518 PAPD4Q6PIY7 484 aaKnown RBP10.25□□□□□ -0.77
LDLR-208ENST00000558518 FAM180AQ6UWF9 173 aa10.25□□□□□ -0.77
LDLR-208ENST00000558518 USP53Q70EK8 1073 aa10.25□□□□□ -0.77
LDLR-208ENST00000558518 ZNF550Q7Z398 422 aa10.25□□□□□ -0.77
LDLR-208ENST00000558518 HIST2H2ABQ8IUE6 130 aaPredicted RBP10.25□□□□□ -0.77
LDLR-208ENST00000558518 SEH1LQ96EE3 360 aa10.25□□□□□ -0.77
LDLR-208ENST00000558518 LCORQ96JN0 433 aaPredicted RBP10.25□□□□□ -0.77
LDLR-208ENST00000558518 PHB2Q99623 299 aa10.25□□□□□ -0.77
LDLR-208ENST00000558518 PIGMQ9H3S5 423 aa10.25□□□□□ -0.77
LDLR-208ENST00000558518 LOC100289279A0A1B0GTE1 492 aa10.24□□□□□ -0.77
LDLR-208ENST00000558518 RAB19A4D1S5 217 aa10.24□□□□□ -0.77
LDLR-208ENST00000558518 OR4C45A6NMZ5 311 aa10.24□□□□□ -0.77
LDLR-208ENST00000558518 P2RY10O00398 339 aa10.24□□□□□ -0.77
LDLR-208ENST00000558518 SLC33A1O00400 549 aaPredicted RBP10.24□□□□□ -0.77
LDLR-208ENST00000558518 SDCBPO00560 298 aaPredicted RBP10.24□□□□□ -0.77
LDLR-208ENST00000558518 UPK3AO75631 287 aa10.24□□□□□ -0.77
LDLR-208ENST00000558518 EIF3GO75821 320 aaKnown RBP eCLIP10.24□□□□□ -0.77
LDLR-208ENST00000558518 STK17BO94768 372 aa10.24□□□□□ -0.77
LDLR-208ENST00000558518 CD14P08571 375 aa10.24□□□□□ -0.77
LDLR-208ENST00000558518 SLC2A1P11166 492 aa10.24□□□□□ -0.77
LDLR-208ENST00000558518 ADCYAP1P18509 176 aa10.24□□□□□ -0.77
LDLR-208ENST00000558518 IGFALSP35858 605 aa10.24□□□□□ -0.77
LDLR-208ENST00000558518 TFF2Q03403 129 aa10.24□□□□□ -0.77
LDLR-208ENST00000558518 PRICKLE4Q2TBC4 344 aa10.24□□□□□ -0.77
LDLR-208ENST00000558518 PABPC1L2AQ5JQF8 200 aa10.24□□□□□ -0.77
LDLR-208ENST00000558518 ACOT7LQ6ZUV0 252 aa10.24□□□□□ -0.77
LDLR-208ENST00000558518 SLC16A9Q7RTY1 509 aa10.24□□□□□ -0.77
LDLR-208ENST00000558518 OOSP2Q86WS3 158 aa10.24□□□□□ -0.77
LDLR-208ENST00000558518 OR4K17Q8NGC6 315 aa10.24□□□□□ -0.77
LDLR-208ENST00000558518 OR5D18Q8NGL1 313 aa10.24□□□□□ -0.77
LDLR-208ENST00000558518 SFT2D1Q8WV19 159 aa10.24□□□□□ -0.77
LDLR-208ENST00000558518 LPAR4Q99677 370 aa10.24□□□□□ -0.77
LDLR-208ENST00000558518 PRMT8Q9NR22 394 aaPredicted RBP10.24□□□□□ -0.77
LDLR-208ENST00000558518 CREBZFQ9NS37 354 aa10.24□□□□□ -0.77
LDLR-208ENST00000558518 CTSFQ9UBX1 484 aa10.24□□□□□ -0.77
LDLR-208ENST00000558518 VSIG4Q9Y279 399 aa10.24□□□□□ -0.77
LDLR-208ENST00000558518 PRSS38A1L453 326 aa10.24□□□□□ -0.77
LDLR-208ENST00000558518 APOC1P02654 83 aa10.24□□□□□ -0.77
LDLR-208ENST00000558518 CPT2P23786 658 aa10.24□□□□□ -0.77
LDLR-208ENST00000558518 PTGFRP43088 359 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms