RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 IQCKQ8N0W5 287 aa2.56□□□□□ -2
SCFD1-221ENST00000556534 CYB561D1Q8N8Q1 229 aa2.56□□□□□ -2
SCFD1-221ENST00000556534 CCDC54Q8NEL0 328 aa2.56□□□□□ -2
SCFD1-221ENST00000556534 VN1R2Q8NFZ6 395 aa2.56□□□□□ -2
SCFD1-221ENST00000556534 OR9G4Q8NGQ1 327 aa2.56□□□□□ -2
SCFD1-221ENST00000556534 OR2G3Q8NGZ4 309 aa2.56□□□□□ -2
SCFD1-221ENST00000556534 PIBF1Q8WXW3 757 aa2.56□□□□□ -2
SCFD1-221ENST00000556534 KIAA1143Q96AT1 154 aaPredicted RBP2.56□□□□□ -2
SCFD1-221ENST00000556534 SGK3Q96BR1 496 aa2.56□□□□□ -2
SCFD1-221ENST00000556534 MED8Q96G25 268 aa2.56□□□□□ -2
SCFD1-221ENST00000556534 TMEM165Q9HC07 324 aa2.56□□□□□ -2
SCFD1-221ENST00000556534 CCNB1IP1Q9NPC3 277 aa2.56□□□□□ -2
SCFD1-221ENST00000556534 SLCO1B3Q9NPD5 702 aa2.56□□□□□ -2
SCFD1-221ENST00000556534 MRPL22Q9NWU5 206 aaKnown RBP2.56□□□□□ -2
SCFD1-221ENST00000556534 CLN8Q9UBY8 286 aa2.56□□□□□ -2
SCFD1-221ENST00000556534 PCYOX1Q9UHG3 505 aa2.56□□□□□ -2
SCFD1-221ENST00000556534 MSH6P52701 1360 aa2.56□□□□□ -2
SCFD1-221ENST00000556534 IGLV11-55A0A075B6I3 123 aa2.55□□□□□ -2
SCFD1-221ENST00000556534 ZNF726A6NNF4 738 aa2.55□□□□□ -2
SCFD1-221ENST00000556534 ANGPTL7O43827 346 aa2.55□□□□□ -2
SCFD1-221ENST00000556534 SPAG7O75391 227 aa2.55□□□□□ -2
SCFD1-221ENST00000556534 CD160O95971 181 aa2.55□□□□□ -2
SCFD1-221ENST00000556534 OTCP00480 354 aa2.55□□□□□ -2
SCFD1-221ENST00000556534 SERPINE2P07093 398 aa2.55□□□□□ -2
SCFD1-221ENST00000556534 CRYGCP07315 174 aa2.55□□□□□ -2
SCFD1-221ENST00000556534 GKN3PP0CG01 181 aa2.55□□□□□ -2
SCFD1-221ENST00000556534 HPGDP15428 266 aa2.55□□□□□ -2
SCFD1-221ENST00000556534 ZNF30P17039 623 aa2.55□□□□□ -2
SCFD1-221ENST00000556534 TCN1P20061 433 aaPredicted RBP2.55□□□□□ -2
SCFD1-221ENST00000556534 SLC2A5P22732 501 aa2.55□□□□□ -2
SCFD1-221ENST00000556534 SLC1A1P43005 524 aa2.55□□□□□ -2
SCFD1-221ENST00000556534 GPR6P46095 362 aaPredicted RBP2.55□□□□□ -2
SCFD1-221ENST00000556534 RFX3P48380 749 aa2.55□□□□□ -2
SCFD1-221ENST00000556534 CX3CR1P49238 355 aa2.55□□□□□ -2
SCFD1-221ENST00000556534 SSR4P51571 173 aa2.55□□□□□ -2
SCFD1-221ENST00000556534 YWHAGP61981 247 aaKnown RBP eCLIP2.55□□□□□ -2
SCFD1-221ENST00000556534 RAB11AP62491 216 aa2.55□□□□□ -2
SCFD1-221ENST00000556534 SMARCB1Q12824 385 aa2.55□□□□□ -2
SCFD1-221ENST00000556534 RAB11BQ15907 218 aa2.55□□□□□ -2
SCFD1-221ENST00000556534 ANKRD26P1Q6NSI1 321 aa2.55□□□□□ -2
SCFD1-221ENST00000556534 Q6ZR03 302 aa2.55□□□□□ -2
SCFD1-221ENST00000556534 THOC6Q86W42 341 aaKnown RBP2.55□□□□□ -2
SCFD1-221ENST00000556534 CMTM1Q8IZ96 169 aa2.55□□□□□ -2
SCFD1-221ENST00000556534 PDIK1LQ8N165 341 aa2.55□□□□□ -2
SCFD1-221ENST00000556534 LIX1Q8N485 282 aa2.55□□□□□ -2
SCFD1-221ENST00000556534 ZADH2Q8N4Q0 377 aa2.55□□□□□ -2
SCFD1-221ENST00000556534 EID2Q8N6I1 236 aa2.55□□□□□ -2
SCFD1-221ENST00000556534 Q8N976 141 aa2.55□□□□□ -2
SCFD1-221ENST00000556534 OR5B3Q8NH48 314 aa2.55□□□□□ -2
SCFD1-221ENST00000556534 OR52E5Q8NH55 327 aa2.55□□□□□ -2
SCFD1-221ENST00000556534 RHEBL1Q8TAI7 183 aa2.55□□□□□ -2
SCFD1-221ENST00000556534 SLC7A13Q8TCU3 470 aa2.55□□□□□ -2
SCFD1-221ENST00000556534 ACTRT1Q8TDG2 376 aa2.55□□□□□ -2
SCFD1-221ENST00000556534 CAPSLQ8WWF8 208 aa2.55□□□□□ -2
SCFD1-221ENST00000556534 GSDMAQ96QA5 445 aa2.55□□□□□ -2
SCFD1-221ENST00000556534 OR2AG1Q9H205 316 aa2.55□□□□□ -2
SCFD1-221ENST00000556534 BLZF1Q9H2G9 400 aa2.55□□□□□ -2
SCFD1-221ENST00000556534 CLSTN2Q9H4D0 955 aa2.55□□□□□ -2
SCFD1-221ENST00000556534 CTPS2Q9NRF8 586 aa2.55□□□□□ -2
SCFD1-221ENST00000556534 MTCH1Q9NZJ7 389 aa2.55□□□□□ -2
SCFD1-221ENST00000556534 SLC17A4Q9Y2C5 497 aa2.55□□□□□ -2
SCFD1-221ENST00000556534 F11RQ9Y624 299 aaKnown RBP2.55□□□□□ -2
SCFD1-221ENST00000556534 DENND4AQ7Z401 1863 aa2.54□□□□□ -2
SCFD1-221ENST00000556534 MROH7-TTC4A0A0A0MT08 1334 aa2.54□□□□□ -2
SCFD1-221ENST00000556534 MGRN1O60291 552 aa2.54□□□□□ -2
SCFD1-221ENST00000556534 EEDO75530 441 aaKnown RBP2.54□□□□□ -2
SCFD1-221ENST00000556534 EIF3GO75821 320 aaKnown RBP eCLIP2.54□□□□□ -2
SCFD1-221ENST00000556534 SERPINA5P05154 406 aa2.54□□□□□ -2
SCFD1-221ENST00000556534 CSF3P09919 207 aa2.54□□□□□ -2
SCFD1-221ENST00000556534 CNR1P21554 472 aa2.54□□□□□ -2
SCFD1-221ENST00000556534 FOXN2P32314 431 aa2.54□□□□□ -2
SCFD1-221ENST00000556534 SLC1A2P43004 574 aa2.54□□□□□ -2
SCFD1-221ENST00000556534 MRPL19P49406 292 aaKnown RBP2.54□□□□□ -2
SCFD1-221ENST00000556534 DAOAP59103 153 aa2.54□□□□□ -2
SCFD1-221ENST00000556534 ACTA2P62736 377 aa2.54□□□□□ -2
SCFD1-221ENST00000556534 ACTG2P63267 376 aa2.54□□□□□ -2
SCFD1-221ENST00000556534 ACTC1P68032 377 aa2.54□□□□□ -2
SCFD1-221ENST00000556534 ZNF92Q03936 586 aa2.54□□□□□ -2
SCFD1-221ENST00000556534 SHHQ15465 462 aa2.54□□□□□ -2
SCFD1-221ENST00000556534 XKR4Q5GH76 650 aa2.54□□□□□ -2
SCFD1-221ENST00000556534 CNIH2Q6PI25 160 aa2.54□□□□□ -2
SCFD1-221ENST00000556534 MBOAT1Q6ZNC8 495 aa2.54□□□□□ -2
SCFD1-221ENST00000556534 PRELID2Q8N945 189 aa2.54□□□□□ -2
SCFD1-221ENST00000556534 C8orf31Q8N9H6 132 aa2.54□□□□□ -2
SCFD1-221ENST00000556534 OR56A4Q8NGH8 313 aa2.54□□□□□ -2
SCFD1-221ENST00000556534 CD300LFQ8TDQ1 290 aa2.54□□□□□ -2
SCFD1-221ENST00000556534 TMEM54Q969K7 222 aa2.54□□□□□ -2
SCFD1-221ENST00000556534 TOP1MTQ969P6 601 aa2.54□□□□□ -2
SCFD1-221ENST00000556534 PKNOX2Q96KN3 472 aa2.54□□□□□ -2
SCFD1-221ENST00000556534 CTRCQ99895 268 aa2.54□□□□□ -2
SCFD1-221ENST00000556534 KCTD14Q9BQ13 255 aaPredicted RBP2.54□□□□□ -2
SCFD1-221ENST00000556534 RTBDNQ9BSG5 229 aaPredicted RBP2.54□□□□□ -2
SCFD1-221ENST00000556534 IFI27L2Q9H2X8 130 aa2.54□□□□□ -2
SCFD1-221ENST00000556534 RGCCQ9H4X1 137 aa2.54□□□□□ -2
SCFD1-221ENST00000556534 TDRD3Q9H7E2 651 aaKnown RBP2.54□□□□□ -2
SCFD1-221ENST00000556534 UGT1A7Q9HAW7 530 aa2.54□□□□□ -2
SCFD1-221ENST00000556534 UGT1A8Q9HAW9 530 aa2.54□□□□□ -2
SCFD1-221ENST00000556534 RETNQ9HD89 108 aa2.54□□□□□ -2
SCFD1-221ENST00000556534 UXTQ9UBK9 157 aaPredicted RBP2.54□□□□□ -2
SCFD1-221ENST00000556534 OPN4Q9UHM6 478 aa2.54□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms