RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 TBXA2RP21731 343 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 HTR2AP28223 471 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 TSFMP43897 325 aaKnown RBP6.91□□□□□ -1.3
LIMA1-216ENST00000552909 CAPZA1P52907 286 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 EMP2P54851 167 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 TSPAN31Q12999 210 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 RUNX2Q13950 521 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 HABP2Q14520 560 aaPredicted RBP6.91□□□□□ -1.3
LIMA1-216ENST00000552909 ACSM3Q53FZ2 586 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 MRM1Q6IN84 353 aaKnown RBP6.91□□□□□ -1.3
LIMA1-216ENST00000552909 H3F3CQ6NXT2 135 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 C11orf88Q6PI97 169 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 STX12Q86Y82 276 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 TEX19Q8NA77 164 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 DNAAF1Q8NEP3 725 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 OR5D16Q8NGK9 328 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 PHOSPHO1Q8TCT1 267 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 FCAMRQ8WWV6 532 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 ASB13Q8WXK3 278 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 OSTF1Q92882 214 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 RAB8BQ92930 207 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 PRRC1Q96M27 445 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 CMTM3Q96MX0 182 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 SERINC2Q96SA4 455 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 NUDT9Q9BW91 350 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 TGIF2Q9GZN2 237 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 VN1R1Q9GZP7 353 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 SLC25A18Q9H1K4 315 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 CXorf36Q9H7Y0 433 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 MKKSQ9NPJ1 570 aaPredicted RBP6.91□□□□□ -1.3
LIMA1-216ENST00000552909 FBXL4Q9UKA2 621 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 NXT1Q9UKK6 140 aaKnown RBP6.91□□□□□ -1.3
LIMA1-216ENST00000552909 PCDHB10Q9UN67 800 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 TP53TG5Q9Y2B4 290 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 CARHSP1Q9Y2V2 147 aaKnown RBP6.91□□□□□ -1.3
LIMA1-216ENST00000552909 OR10H1Q9Y4A9 318 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 TRAV1-2A0A0B4J238 106 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 IGHV3-20A0A0C4DH32 117 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 KANTRA0A1W2PQU2 76 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 DAPL1A0PJW8 107 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 ANKRD20A5PA0PJZ0 165 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 RFPL4AA6NLU0 287 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 ZNF729A6NN14 1252 aaPredicted RBP6.91□□□□□ -1.3
LIMA1-216ENST00000552909 RFPL4AL1F8VTS6 287 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 J3QRE1 110 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 B3GALT2O43825 422 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 ERAL1O75616 437 aaKnown RBP6.91□□□□□ -1.3
LIMA1-216ENST00000552909 MT-ND5P03915 603 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 ZNF10P21506 573 aaPredicted RBP6.91□□□□□ -1.3
LIMA1-216ENST00000552909 FPR3P25089 353 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 AGTR1P30556 359 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 AKR1C2P52895 323 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 MANFP55145 182 aaKnown RBP6.91□□□□□ -1.3
LIMA1-216ENST00000552909 TAS2R43P59537 309 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 PPIAP62937 165 aaKnown RBP6.91□□□□□ -1.3
LIMA1-216ENST00000552909 AKR1C1Q04828 323 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 Q0VFX4 171 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 MPPED2Q15777 294 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 C2orf68Q2NKX9 166 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 C10orf91Q5T1B1 145 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 C3orf33Q6P1S2 294 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 LANCL3Q6ZV70 420 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 MED25Q71SY5 747 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 OR2W3Q7Z3T1 314 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 CMTM4Q8IZR5 234 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 OR2AK2Q8NG84 335 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 OR1S2Q8NGQ3 325 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 OR4Q3Q8NH05 313 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 LGALS14Q8TCE9 139 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 GCDHQ92947 438 aaPredicted RBP6.91□□□□□ -1.3
LIMA1-216ENST00000552909 SLC25A28Q96A46 364 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 NEURL3Q96EH8 262 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 PHYHIPLQ96FC7 376 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 TMEM41AQ96HV5 264 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 TBX5Q99593 518 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 LANCL2Q9NS86 450 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 ASF1BQ9NVP2 202 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 TAS2R10Q9NYW0 307 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 GHRLQ9UBU3 117 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 PLEKHA6Q9Y2H5 1048 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 NUP210LQ5VU65 1888 aa6.9□□□□□ -1.3
LIMA1-216ENST00000552909 C1orf196B1AJZ1 125 aa6.9□□□□□ -1.3
LIMA1-216ENST00000552909 PYCARD-AS1I3L0S3 204 aa6.9□□□□□ -1.3
LIMA1-216ENST00000552909 PEX12O00623 359 aa6.9□□□□□ -1.3
LIMA1-216ENST00000552909 PIP5K1CO60331 668 aa6.9□□□□□ -1.3
LIMA1-216ENST00000552909 FMO6PO60774 539 aa6.9□□□□□ -1.3
LIMA1-216ENST00000552909 CEACAM4O75871 244 aa6.9□□□□□ -1.3
LIMA1-216ENST00000552909 AIFM1O95831 613 aa6.9□□□□□ -1.3
LIMA1-216ENST00000552909 HEXBP07686 556 aa6.9□□□□□ -1.3
LIMA1-216ENST00000552909 CELA2AP08217 269 aa6.9□□□□□ -1.3
LIMA1-216ENST00000552909 C8orf89P0DMQ9 161 aa6.9□□□□□ -1.3
LIMA1-216ENST00000552909 VSIG10L2P0DP72 767 aa6.9□□□□□ -1.3
LIMA1-216ENST00000552909 ZNF3P17036 446 aa6.9□□□□□ -1.3
LIMA1-216ENST00000552909 BDKRB2P30411 391 aa6.9□□□□□ -1.3
LIMA1-216ENST00000552909 MNDAP41218 407 aa6.9□□□□□ -1.3
LIMA1-216ENST00000552909 LUMP51884 338 aaPredicted RBP6.9□□□□□ -1.3
LIMA1-216ENST00000552909 BTG2P78543 158 aa6.9□□□□□ -1.3
LIMA1-216ENST00000552909 PEA15Q15121 130 aa6.9□□□□□ -1.3
LIMA1-216ENST00000552909 RBMS2Q15434 407 aaKnown RBP6.9□□□□□ -1.3
LIMA1-216ENST00000552909 SGCAQ16586 387 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms