RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 SKP2Q13309 424 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 RAB11BQ15907 218 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 SLC22A6Q4U2R8 563 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 ZNF542PQ5EBM4 170 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 PDSS1Q5T2R2 415 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 COL13A1Q5TAT6 717 aaPredicted RBP4.88□□□□□ -1.63
LIMA1-212ENST00000552491 KCNRGQ8N5I3 272 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 ZNF321PQ8N8H1 164 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 AVL9Q8NBF6 648 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 OR5M8Q8NGP6 311 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 TSEN15Q8WW01 171 aaKnown RBP4.88□□□□□ -1.63
LIMA1-212ENST00000552491 THRSPQ92748 146 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 EDAQ92838 391 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 TAAR8Q969N4 342 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 CYYR1Q96J86 154 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 WDR92Q96MX6 357 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 INTS14Q96SY0 518 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 SLC25A21Q9BQT8 299 aaPredicted RBP4.88□□□□□ -1.63
LIMA1-212ENST00000552491 FAM117AQ9C073 453 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 OR10A5Q9H207 317 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 Q9N2J8 555 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 MYOZ1Q9NP98 299 aaPredicted RBP4.88□□□□□ -1.63
LIMA1-212ENST00000552491 TAS2R3Q9NYW6 316 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 KLK13Q9UKR3 277 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 TNFSF18Q9UNG2 199 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 GTF2A1LQ9UNN4 478 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 PLCL2Q9UPR0 1127 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 VSIG4Q9Y279 399 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 OR10H1Q9Y4A9 318 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 TMEM14AQ9Y6G1 99 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 PCDH15Q96QU1 1955 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 A0A0J9YY10 115 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 A0A1W2PPC1 479 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 FITM1A5D6W6 292 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 HSPB2A8KAH6 182 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 GPR31O00270 319 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 SULT1C2O00338 296 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 CDC40O60508 579 aaKnown RBP eCLIP4.88□□□□□ -1.63
LIMA1-212ENST00000552491 LMX1BO60663 402 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 AMY2AP04746 511 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 GP1BAP07359 652 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 CNR1P21554 472 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 GDI1P31150 447 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 TAS2R19P59542 299 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 ACTBP60709 375 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 ACTG1P63261 375 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 SQSTM1Q13501 440 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 SLC17A1Q14916 467 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 TOMM20Q15388 145 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 TOMM34Q15785 309 aaPredicted RBP4.88□□□□□ -1.63
LIMA1-212ENST00000552491 HSPB2Q16082 182 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 EMC4Q5J8M3 183 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 PABPC1L2AQ5JQF8 200 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 GLT8D1Q68CQ7 371 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 WBP2NLQ6ICG8 309 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 TMEM88Q6PEY1 159 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 POMZP3Q6PJE2 187 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 TMEM184AQ6ZMB5 413 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 MED25Q71SY5 747 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 ZNF627Q7L945 461 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 TMEM17Q86X19 198 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 METTL27Q8N6F8 245 aaPredicted RBP4.88□□□□□ -1.63
LIMA1-212ENST00000552491 ZNF615Q8N8J6 731 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 TMEM229BQ8NBD8 167 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 TMEM185AQ8NFB2 350 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 OR1S2Q8NGQ3 325 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 OTOSQ8NHW6 89 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 PHOSPHO1Q8TCT1 267 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 ASB5Q8WWX0 329 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 SLC41A2Q96JW4 573 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 VRK1Q99986 396 aaPredicted RBP4.88□□□□□ -1.63
LIMA1-212ENST00000552491 CCDC3Q9BQI4 270 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 EDEM2Q9BV94 578 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 POTEKPQ9BYX7 375 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 MRPL22Q9NWU5 206 aaKnown RBP4.88□□□□□ -1.63
LIMA1-212ENST00000552491 OBP2AQ9NY56 170 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 TAS2R4Q9NYW5 299 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 CPNE7Q9UBL6 633 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 GRHPRQ9UBQ7 328 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 EPHA6Q9UF33 1036 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 GPN3Q9UHW5 284 aaPredicted RBP4.88□□□□□ -1.63
LIMA1-212ENST00000552491 MSRAQ9UJ68 235 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 B9D1Q9UPM9 204 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 FARSAQ9Y285 508 aaKnown RBP4.88□□□□□ -1.63
LIMA1-212ENST00000552491 TMEM184BQ9Y519 407 aaPredicted RBP4.88□□□□□ -1.63
LIMA1-212ENST00000552491 WDFY3Q8IZQ1 3526 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 CPAMD8Q8IZJ3 1885 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 LOC100509620A0A075B734 347 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 LOC101059948A0A1B0GTJ6 334 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 DCDC2BA2VCK2 349 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 OR14I1A6ND48 311 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 TMEM235A6NFC5 223 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 TTLL8A6PVC2 850 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 C2orf74A8MZ97 194 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 C11orf98E9PRG8 122 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 PHYHO14832 338 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 OR2F2O95006 317 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 PNMTP11086 282 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 TACR3P29371 465 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 AVPR2P30518 371 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms