RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 CADM1Q9BY67 442 aaKnown RBP4.53□□□□□ -1.68
CLIP1-217ENST00000543205 PRRG4Q9BZD6 226 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 TRIM15Q9C019 465 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 POLR2J2Q9GZM3 115 aaKnown RBP4.53□□□□□ -1.68
CLIP1-217ENST00000543205 POLR2J3Q9H1A7 115 aaKnown RBP4.53□□□□□ -1.68
CLIP1-217ENST00000543205 SRD5A3Q9H8P0 318 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 C12orf10Q9HB07 376 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 KLHL9Q9P2J3 617 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 KCNN3Q9UGI6 736 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 MCTS1Q9ULC4 181 aaKnown RBP4.53□□□□□ -1.68
CLIP1-217ENST00000543205 NDRG4Q9ULP0 352 aaKnown RBP4.53□□□□□ -1.68
CLIP1-217ENST00000543205 FAM32AQ9Y421 112 aaKnown RBP4.53□□□□□ -1.68
CLIP1-217ENST00000543205 COMMD3-BMI1R4GMX3 469 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 V9GYQ6 96 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 C2CD3Q4AC94 2353 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 SHANK1Q9Y566 2161 aa4.53□□□□□ -1.69
CLIP1-217ENST00000543205 NCKAP5O14513 1909 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 NBASA2RRP1 2371 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 BSNQ9UPA5 3926 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 TRBV2A0A0J9YWF9 115 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 FAM230AA0A1W2PPH8 454 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 MAGEA13PA6NCF6 341 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 CD8B2A6NJW9 211 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 SLC22A20A6NK97 555 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 SULT2B1O00204 365 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 TLX2O43763 284 aaPredicted RBP4.52□□□□□ -1.69
CLIP1-217ENST00000543205 CXCL13O43927 109 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 TPST2O60704 377 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 CIB2O75838 187 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 CH25HO95992 272 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 FCGR2AP12318 317 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 ITGA2P17301 1181 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 SHC1P29353 583 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 CDH12P55289 794 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 CSNK2A1P68400 391 aaPredicted RBP4.52□□□□□ -1.69
CLIP1-217ENST00000543205 MS4A2Q01362 244 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 MYBPHQ13203 477 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 PON3Q15166 354 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 CTU2Q2VPK5 515 aaKnown RBP4.52□□□□□ -1.69
CLIP1-217ENST00000543205 RTL6Q6ICC9 239 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 TMEM108Q6UXF1 575 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 TMPPEQ6ZT21 453 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 GPAT4Q86UL3 456 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 RTN4RL2Q86UN3 420 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 ZDHHC21Q8IVQ6 265 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 BHLHE23Q8NDY6 225 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 ADAMTS16Q8TE57 1224 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 PHF10Q8WUB8 498 aaKnown RBP4.52□□□□□ -1.69
CLIP1-217ENST00000543205 RND1Q92730 232 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 SLC38A4Q969I6 547 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 CPNE4Q96A23 557 aaPredicted RBP4.52□□□□□ -1.69
CLIP1-217ENST00000543205 ZHX1-C8orf76Q96EF9 292 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 SLC41A3Q96GZ6 507 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 ADGRG7Q96K78 797 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 PRRC1Q96M27 445 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 TTYH2Q9BSA4 534 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 FNDC11Q9BVV2 318 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 TAPBPLQ9BX59 468 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 C1QTNF5Q9BXJ0 243 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 POTEKPQ9BYX7 375 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 AMBRA1Q9C0C7 1298 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 OR11A1Q9GZK7 315 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 LRMDAQ9H2I8 198 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 SLCO5A1Q9H2Y9 848 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 OR6C3Q9NZP0 311 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 ERRFI1Q9UJM3 462 aaPredicted RBP4.52□□□□□ -1.69
CLIP1-217ENST00000543205 SLC7A7Q9UM01 511 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 HDGFL3Q9Y3E1 203 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 ZNF175Q9Y473 711 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 FAM215AQ9Y5M1 114 aa4.52□□□□□ -1.69
CLIP1-217ENST00000543205 A0A087WUJ7 227 aa4.51□□□□□ -1.69
CLIP1-217ENST00000543205 A0A1W2PN81 502 aa4.51□□□□□ -1.69
CLIP1-217ENST00000543205 HSPB2A8KAH6 182 aa4.51□□□□□ -1.69
CLIP1-217ENST00000543205 hCG_2039718K7EN88 272 aa4.51□□□□□ -1.69
CLIP1-217ENST00000543205 PSMD9O00233 223 aa4.51□□□□□ -1.69
CLIP1-217ENST00000543205 CHP2O43745 196 aa4.51□□□□□ -1.69
CLIP1-217ENST00000543205 OR5F1O95221 314 aa4.51□□□□□ -1.69
CLIP1-217ENST00000543205 AHSA1O95433 338 aa4.51□□□□□ -1.69
CLIP1-217ENST00000543205 PMS2P2O95744 297 aa4.51□□□□□ -1.69
CLIP1-217ENST00000543205 FABP3P05413 133 aa4.51□□□□□ -1.69
CLIP1-217ENST00000543205 GPIP06744 558 aa4.51□□□□□ -1.69
CLIP1-217ENST00000543205 ATP6V1B2P21281 511 aa4.51□□□□□ -1.69
CLIP1-217ENST00000543205 GTF2E2P29084 291 aaKnown RBP4.51□□□□□ -1.69
CLIP1-217ENST00000543205 TIMP3P35625 211 aa4.51□□□□□ -1.69
CLIP1-217ENST00000543205 CHRNA7P36544 502 aa4.51□□□□□ -1.69
CLIP1-217ENST00000543205 KIR2DL3P43628 341 aa4.51□□□□□ -1.69
CLIP1-217ENST00000543205 YAP1P46937 504 aaKnown RBP4.51□□□□□ -1.69
CLIP1-217ENST00000543205 NUP107P57740 925 aa4.51□□□□□ -1.69
CLIP1-217ENST00000543205 OR2B6P58173 313 aa4.51□□□□□ -1.69
CLIP1-217ENST00000543205 SLC35A1P78382 337 aa4.51□□□□□ -1.69
CLIP1-217ENST00000543205 ST3GAL3Q11203 375 aa4.51□□□□□ -1.69
CLIP1-217ENST00000543205 CCNIQ14094 377 aa4.51□□□□□ -1.69
CLIP1-217ENST00000543205 FLOT2Q14254 428 aa4.51□□□□□ -1.69
CLIP1-217ENST00000543205 HSPB2Q16082 182 aa4.51□□□□□ -1.69
CLIP1-217ENST00000543205 FAM98BQ52LJ0 330 aaKnown RBP4.51□□□□□ -1.69
CLIP1-217ENST00000543205 PRR31Q5SQ13 230 aa4.51□□□□□ -1.69
CLIP1-217ENST00000543205 SERTAD4-AS1Q5TG53 156 aa4.51□□□□□ -1.69
CLIP1-217ENST00000543205 C1orf140Q5VVS0 124 aa4.51□□□□□ -1.69
CLIP1-217ENST00000543205 LCN8Q6JVE9 175 aa4.51□□□□□ -1.69
CLIP1-217ENST00000543205 RGS7BPQ6MZT1 257 aaPredicted RBP4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms