RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 PAPD4Q6PIY7 484 aaKnown RBP10.16□□□□□ -0.78
SYNE1-237ENST00000539504 MDGA2Q7Z553 956 aa10.16□□□□□ -0.78
SYNE1-237ENST00000539504 PRR22Q8IZ63 422 aa10.16□□□□□ -0.78
SYNE1-237ENST00000539504 OR51A2Q8NGJ7 313 aa10.16□□□□□ -0.78
SYNE1-237ENST00000539504 OTOSQ8NHW6 89 aa10.16□□□□□ -0.78
SYNE1-237ENST00000539504 ASB13Q8WXK3 278 aa10.16□□□□□ -0.78
SYNE1-237ENST00000539504 FAM46BQ96A09 425 aa10.16□□□□□ -0.78
SYNE1-237ENST00000539504 SLC41A2Q96JW4 573 aa10.16□□□□□ -0.78
SYNE1-237ENST00000539504 NDRG3Q9UGV2 375 aa10.16□□□□□ -0.78
SYNE1-237ENST00000539504 PLRG1O43660 514 aaKnown RBP10.16□□□□□ -0.78
SYNE1-237ENST00000539504 EIF4E2O60573 245 aaKnown RBP10.16□□□□□ -0.78
SYNE1-237ENST00000539504 PNPP00491 289 aa10.16□□□□□ -0.78
SYNE1-237ENST00000539504 CXCR1P25024 350 aa10.16□□□□□ -0.78
SYNE1-237ENST00000539504 AIMP2Q13155 320 aaKnown RBP10.16□□□□□ -0.78
SYNE1-237ENST00000539504 PPP1R1AQ13522 171 aa10.16□□□□□ -0.78
SYNE1-237ENST00000539504 EIF2B1Q14232 305 aaKnown RBP10.16□□□□□ -0.78
SYNE1-237ENST00000539504 NFATC4Q14934 902 aa10.16□□□□□ -0.78
SYNE1-237ENST00000539504 ZNF440Q8IYI8 595 aa10.16□□□□□ -0.78
SYNE1-237ENST00000539504 ARMC10Q8N2F6 343 aa10.16□□□□□ -0.78
SYNE1-237ENST00000539504 C2CD4CQ8TF44 421 aa10.16□□□□□ -0.78
SYNE1-237ENST00000539504 DCUN1D4Q92564 292 aa10.16□□□□□ -0.78
SYNE1-237ENST00000539504 THRSPQ92748 146 aa10.16□□□□□ -0.78
SYNE1-237ENST00000539504 PHB2Q99623 299 aa10.16□□□□□ -0.78
SYNE1-237ENST00000539504 FAM60AQ9NP50 221 aa10.16□□□□□ -0.78
SYNE1-237ENST00000539504 EPHA6Q9UF33 1036 aa10.16□□□□□ -0.78
SYNE1-237ENST00000539504 A0A0B4J2A0 478 aa10.15□□□□□ -0.78
SYNE1-237ENST00000539504 PHYHO14832 338 aa10.15□□□□□ -0.78
SYNE1-237ENST00000539504 ZNF208O43345 1280 aa10.15□□□□□ -0.78
SYNE1-237ENST00000539504 RIDAP52758 137 aaKnown RBP10.15□□□□□ -0.78
SYNE1-237ENST00000539504 ELOCQ15369 112 aa10.15□□□□□ -0.78
SYNE1-237ENST00000539504 MOGAT2Q3SYC2 334 aa10.15□□□□□ -0.78
SYNE1-237ENST00000539504 EEF1A1P5Q5VTE0 462 aa10.15□□□□□ -0.78
SYNE1-237ENST00000539504 H3F3CQ6NXT2 135 aa10.15□□□□□ -0.78
SYNE1-237ENST00000539504 RAB11FIP2Q7L804 512 aa10.15□□□□□ -0.78
SYNE1-237ENST00000539504 EXD3Q8N9H8 876 aa10.15□□□□□ -0.78
SYNE1-237ENST00000539504 OR13C3Q8NGS6 347 aa10.15□□□□□ -0.78
SYNE1-237ENST00000539504 OR8B4Q96RC9 309 aa10.15□□□□□ -0.78
SYNE1-237ENST00000539504 ZNF587Q96SQ5 575 aaPredicted RBP10.15□□□□□ -0.78
SYNE1-237ENST00000539504 CST11Q9H112 138 aa10.15□□□□□ -0.78
SYNE1-237ENST00000539504 SHPKQ9UHJ6 478 aa10.15□□□□□ -0.78
SYNE1-237ENST00000539504 MPDZO75970 2070 aa10.15□□□□□ -0.78
SYNE1-237ENST00000539504 RNF222A6NCQ9 220 aa10.15□□□□□ -0.78
SYNE1-237ENST00000539504 ZNF705EA8MWA4 302 aaPredicted RBP10.15□□□□□ -0.78
SYNE1-237ENST00000539504 NPIPB9F8W1W9 429 aa10.15□□□□□ -0.78
SYNE1-237ENST00000539504 TGFBR3LH3BV60 316 aa10.15□□□□□ -0.78
SYNE1-237ENST00000539504 HCRTR2O43614 444 aa10.15□□□□□ -0.78
SYNE1-237ENST00000539504 APEHP13798 732 aaKnown RBP10.15□□□□□ -0.78
SYNE1-237ENST00000539504 GNALP38405 381 aa10.15□□□□□ -0.78
SYNE1-237ENST00000539504 SSBP1Q04837 148 aaKnown RBP10.15□□□□□ -0.78
SYNE1-237ENST00000539504 OR52W1Q6IF63 320 aa10.15□□□□□ -0.78
SYNE1-237ENST00000539504 LPCAT3Q6P1A2 487 aa10.15□□□□□ -0.78
SYNE1-237ENST00000539504 TMEM184AQ6ZMB5 413 aa10.15□□□□□ -0.78
SYNE1-237ENST00000539504 ATG4DQ86TL0 474 aaPredicted RBP10.15□□□□□ -0.78
SYNE1-237ENST00000539504 LDLRAD3Q86YD5 345 aa10.15□□□□□ -0.78
SYNE1-237ENST00000539504 ZFP82Q8N141 532 aa10.15□□□□□ -0.78
SYNE1-237ENST00000539504 TAAR8Q969N4 342 aa10.15□□□□□ -0.78
SYNE1-237ENST00000539504 FOXRED1Q96CU9 486 aaPredicted RBP10.15□□□□□ -0.78
SYNE1-237ENST00000539504 GAL3ST4Q96RP7 486 aa10.15□□□□□ -0.78
SYNE1-237ENST00000539504 C1orf198Q9H425 327 aa10.15□□□□□ -0.78
SYNE1-237ENST00000539504 BARX1Q9HBU1 254 aaPredicted RBP10.15□□□□□ -0.78
SYNE1-237ENST00000539504 OR2S2Q9NQN1 319 aa10.15□□□□□ -0.78
SYNE1-237ENST00000539504 ZNF629Q9UEG4 869 aaPredicted RBP10.15□□□□□ -0.78
SYNE1-237ENST00000539504 B9D1Q9UPM9 204 aa10.15□□□□□ -0.78
SYNE1-237ENST00000539504 VSIG4Q9Y279 399 aa10.15□□□□□ -0.78
SYNE1-237ENST00000539504 FARS2O95363 451 aaKnown RBP10.15□□□□□ -0.79
SYNE1-237ENST00000539504 CD8AP01732 235 aa10.15□□□□□ -0.79
SYNE1-237ENST00000539504 PGAM2P15259 253 aa10.15□□□□□ -0.79
SYNE1-237ENST00000539504 C1QL3Q5VWW1 255 aa10.15□□□□□ -0.79
SYNE1-237ENST00000539504 KCTD18Q6PI47 426 aaPredicted RBP10.15□□□□□ -0.79
SYNE1-237ENST00000539504 ADGRE4PQ86SQ3 457 aa10.15□□□□□ -0.79
SYNE1-237ENST00000539504 TRAPPC6BQ86SZ2 158 aa10.15□□□□□ -0.79
SYNE1-237ENST00000539504 MARCH3Q86UD3 253 aa10.15□□□□□ -0.79
SYNE1-237ENST00000539504 TMED6Q8WW62 240 aa10.15□□□□□ -0.79
SYNE1-237ENST00000539504 EDAQ92838 391 aa10.15□□□□□ -0.79
SYNE1-237ENST00000539504 CMBLQ96DG6 245 aa10.15□□□□□ -0.79
SYNE1-237ENST00000539504 YBX2Q9Y2T7 364 aaKnown RBP10.15□□□□□ -0.79
SYNE1-237ENST00000539504 TMED7Q9Y3B3 224 aa10.15□□□□□ -0.79
SYNE1-237ENST00000539504 MRPS18BQ9Y676 258 aaKnown RBP10.15□□□□□ -0.79
SYNE1-237ENST00000539504 METTL21EPA6NDL7 271 aa10.14□□□□□ -0.79
SYNE1-237ENST00000539504 SULT1C2O00338 296 aa10.14□□□□□ -0.79
SYNE1-237ENST00000539504 ST6GAL1P15907 406 aa10.14□□□□□ -0.79
SYNE1-237ENST00000539504 CSRP1P21291 193 aaKnown RBP10.14□□□□□ -0.79
SYNE1-237ENST00000539504 MFGE8Q08431 387 aaPredicted RBP10.14□□□□□ -0.79
SYNE1-237ENST00000539504 LYG2Q86SG7 212 aa10.14□□□□□ -0.79
SYNE1-237ENST00000539504 ZNF679Q8IYX0 411 aa10.14□□□□□ -0.79
SYNE1-237ENST00000539504 GVQW1Q8N7I0 195 aa10.14□□□□□ -0.79
SYNE1-237ENST00000539504 FRMD1Q8N878 549 aa10.14□□□□□ -0.79
SYNE1-237ENST00000539504 AVL9Q8NBF6 648 aa10.14□□□□□ -0.79
SYNE1-237ENST00000539504 OR13C8Q8NGS7 320 aa10.14□□□□□ -0.79
SYNE1-237ENST00000539504 ARL11Q969Q4 196 aa10.14□□□□□ -0.79
SYNE1-237ENST00000539504 ADOQ96SZ5 270 aa10.14□□□□□ -0.79
SYNE1-237ENST00000539504 PRRT1Q99946 306 aa10.14□□□□□ -0.79
SYNE1-237ENST00000539504 LDHAL6BQ9BYZ2 381 aaPredicted RBP10.14□□□□□ -0.79
SYNE1-237ENST00000539504 SCPEP1Q9HB40 452 aa10.14□□□□□ -0.79
SYNE1-237ENST00000539504 UBQLN4Q9NRR5 601 aa10.14□□□□□ -0.79
SYNE1-237ENST00000539504 PNO1Q9NRX1 252 aaKnown RBP10.14□□□□□ -0.79
SYNE1-237ENST00000539504 KLK13Q9UKR3 277 aa10.14□□□□□ -0.79
SYNE1-237ENST00000539504 ARHGEF17Q96PE2 2063 aaPredicted RBP10.14□□□□□ -0.79
SYNE1-237ENST00000539504 EIF1AYO14602 144 aaKnown RBP10.14□□□□□ -0.79
SYNE1-237ENST00000539504 ZNF264O43296 627 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms